Strain Fitness in Rahnella sp. WP5 around EX31_RS15375

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS15370 and EX31_RS15375 are separated by 1 nucleotidesEX31_RS15375 and EX31_RS15380 overlap by 4 nucleotidesEX31_RS15380 and EX31_RS15385 overlap by 4 nucleotides EX31_RS15370: EX31_RS15370 - homocitrate synthase, at 24,936 to 26,138 _RS15370 EX31_RS15375: EX31_RS15375 - nitrogen fixation protein NifW, at 26,140 to 26,478 _RS15375 EX31_RS15380: EX31_RS15380 - nitrogen fixation protein NifZ, at 26,475 to 26,918 _RS15380 EX31_RS15385: EX31_RS15385 - nitrogen fixation protein NifM, at 26,915 to 27,709 _RS15385 Position (kb) 26 27Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 25.249 kb on + strand, within EX31_RS15370at 25.249 kb on + strand, within EX31_RS15370at 25.249 kb on + strand, within EX31_RS15370at 25.249 kb on + strand, within EX31_RS15370at 25.250 kb on - strand, within EX31_RS15370at 25.250 kb on - strand, within EX31_RS15370at 25.250 kb on - strand, within EX31_RS15370at 25.250 kb on - strand, within EX31_RS15370at 25.253 kb on + strand, within EX31_RS15370at 25.253 kb on + strand, within EX31_RS15370at 25.253 kb on + strand, within EX31_RS15370at 25.253 kb on + strand, within EX31_RS15370at 25.253 kb on + strand, within EX31_RS15370at 25.253 kb on + strand, within EX31_RS15370at 25.253 kb on + strand, within EX31_RS15370at 25.254 kb on - strand, within EX31_RS15370at 25.294 kb on + strand, within EX31_RS15370at 25.294 kb on + strand, within EX31_RS15370at 25.295 kb on - strand, within EX31_RS15370at 25.328 kb on + strand, within EX31_RS15370at 25.329 kb on - strand, within EX31_RS15370at 25.361 kb on + strand, within EX31_RS15370at 25.373 kb on + strand, within EX31_RS15370at 25.373 kb on + strand, within EX31_RS15370at 25.373 kb on + strand, within EX31_RS15370at 25.374 kb on - strand, within EX31_RS15370at 25.450 kb on + strand, within EX31_RS15370at 25.450 kb on + strand, within EX31_RS15370at 25.450 kb on + strand, within EX31_RS15370at 25.450 kb on + strand, within EX31_RS15370at 25.451 kb on - strand, within EX31_RS15370at 25.451 kb on - strand, within EX31_RS15370at 25.472 kb on + strand, within EX31_RS15370at 25.472 kb on + strand, within EX31_RS15370at 25.499 kb on + strand, within EX31_RS15370at 25.499 kb on + strand, within EX31_RS15370at 25.500 kb on - strand, within EX31_RS15370at 25.511 kb on + strand, within EX31_RS15370at 25.522 kb on + strand, within EX31_RS15370at 25.552 kb on + strand, within EX31_RS15370at 25.552 kb on + strand, within EX31_RS15370at 25.552 kb on + strand, within EX31_RS15370at 25.552 kb on + strand, within EX31_RS15370at 25.552 kb on + strand, within EX31_RS15370at 25.552 kb on + strand, within EX31_RS15370at 25.552 kb on + strand, within EX31_RS15370at 25.552 kb on + strand, within EX31_RS15370at 25.552 kb on + strand, within EX31_RS15370at 25.553 kb on - strand, within EX31_RS15370at 25.553 kb on - strand, within EX31_RS15370at 25.553 kb on - strand, within EX31_RS15370at 25.553 kb on - strand, within EX31_RS15370at 25.553 kb on - strand, within EX31_RS15370at 25.721 kb on + strand, within EX31_RS15370at 25.721 kb on + strand, within EX31_RS15370at 25.974 kb on + strand, within EX31_RS15370at 25.974 kb on + strand, within EX31_RS15370at 25.974 kb on + strand, within EX31_RS15370at 25.976 kb on + strand, within EX31_RS15370at 25.977 kb on - strand, within EX31_RS15370at 26.045 kb on + strandat 26.046 kb on - strandat 26.046 kb on - strandat 26.397 kb on + strand, within EX31_RS15375at 26.398 kb on - strand, within EX31_RS15375at 26.398 kb on - strand, within EX31_RS15375at 26.419 kb on + strand, within EX31_RS15375at 26.419 kb on + strand, within EX31_RS15375at 26.420 kb on - strand, within EX31_RS15375at 26.468 kb on + strandat 26.468 kb on + strandat 26.468 kb on + strandat 26.469 kb on - strandat 26.469 kb on - strandat 26.469 kb on - strandat 26.524 kb on + strand, within EX31_RS15380at 26.525 kb on - strand, within EX31_RS15380at 26.537 kb on + strand, within EX31_RS15380at 26.538 kb on - strand, within EX31_RS15380at 26.566 kb on + strand, within EX31_RS15380at 26.566 kb on + strand, within EX31_RS15380at 26.566 kb on + strand, within EX31_RS15380at 26.566 kb on + strand, within EX31_RS15380at 26.566 kb on + strand, within EX31_RS15380at 26.567 kb on - strand, within EX31_RS15380at 26.592 kb on + strand, within EX31_RS15380at 26.592 kb on + strand, within EX31_RS15380at 26.592 kb on + strand, within EX31_RS15380at 26.593 kb on - strand, within EX31_RS15380at 26.596 kb on + strand, within EX31_RS15380at 26.596 kb on + strand, within EX31_RS15380at 26.596 kb on + strand, within EX31_RS15380at 26.596 kb on + strand, within EX31_RS15380at 26.596 kb on + strand, within EX31_RS15380at 26.596 kb on + strand, within EX31_RS15380at 26.596 kb on + strand, within EX31_RS15380at 26.596 kb on + strand, within EX31_RS15380at 26.596 kb on + strand, within EX31_RS15380at 26.597 kb on - strand, within EX31_RS15380at 26.597 kb on - strand, within EX31_RS15380at 26.597 kb on - strand, within EX31_RS15380at 26.597 kb on - strand, within EX31_RS15380at 26.597 kb on - strand, within EX31_RS15380at 26.597 kb on - strand, within EX31_RS15380at 26.597 kb on - strand, within EX31_RS15380at 26.597 kb on - strand, within EX31_RS15380at 26.597 kb on - strand, within EX31_RS15380at 26.597 kb on - strand, within EX31_RS15380at 26.634 kb on + strand, within EX31_RS15380at 26.634 kb on + strand, within EX31_RS15380at 26.634 kb on + strand, within EX31_RS15380at 26.635 kb on - strand, within EX31_RS15380at 26.635 kb on - strand, within EX31_RS15380at 26.635 kb on - strand, within EX31_RS15380at 26.635 kb on - strand, within EX31_RS15380at 26.635 kb on - strand, within EX31_RS15380at 26.635 kb on - strand, within EX31_RS15380at 26.635 kb on - strand, within EX31_RS15380at 26.844 kb on + strand, within EX31_RS15380at 26.869 kb on + strand, within EX31_RS15380at 26.920 kb on + strandat 26.920 kb on + strandat 26.920 kb on + strandat 26.920 kb on + strandat 26.920 kb on + strandat 26.921 kb on - strandat 26.939 kb on + strandat 27.005 kb on + strand, within EX31_RS15385at 27.005 kb on + strand, within EX31_RS15385at 27.005 kb on + strand, within EX31_RS15385at 27.005 kb on + strand, within EX31_RS15385at 27.046 kb on - strand, within EX31_RS15385at 27.046 kb on - strand, within EX31_RS15385at 27.180 kb on + strand, within EX31_RS15385at 27.180 kb on + strand, within EX31_RS15385at 27.180 kb on + strand, within EX31_RS15385at 27.180 kb on + strand, within EX31_RS15385at 27.180 kb on + strand, within EX31_RS15385at 27.183 kb on + strand, within EX31_RS15385at 27.183 kb on + strand, within EX31_RS15385at 27.183 kb on + strand, within EX31_RS15385at 27.183 kb on + strand, within EX31_RS15385at 27.183 kb on + strand, within EX31_RS15385at 27.183 kb on + strand, within EX31_RS15385at 27.184 kb on - strand, within EX31_RS15385at 27.184 kb on - strand, within EX31_RS15385at 27.184 kb on - strand, within EX31_RS15385at 27.184 kb on - strand, within EX31_RS15385at 27.210 kb on + strand, within EX31_RS15385at 27.211 kb on - strand, within EX31_RS15385at 27.211 kb on - strand, within EX31_RS15385at 27.211 kb on - strand, within EX31_RS15385at 27.308 kb on + strand, within EX31_RS15385at 27.308 kb on + strand, within EX31_RS15385at 27.308 kb on + strand, within EX31_RS15385

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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25,249 + EX31_RS15370 0.26 +0.5
25,249 + EX31_RS15370 0.26 +0.9
25,249 + EX31_RS15370 0.26 +0.8
25,249 + EX31_RS15370 0.26 +0.6
25,250 - EX31_RS15370 0.26 +1.4
25,250 - EX31_RS15370 0.26 +1.6
25,250 - EX31_RS15370 0.26 +0.5
25,250 - EX31_RS15370 0.26 -0.7
25,253 + EX31_RS15370 0.26 -0.0
25,253 + EX31_RS15370 0.26 +0.4
25,253 + EX31_RS15370 0.26 +0.8
25,253 + EX31_RS15370 0.26 +1.3
25,253 + EX31_RS15370 0.26 +1.3
25,253 + EX31_RS15370 0.26 -0.4
25,253 + EX31_RS15370 0.26 -1.6
25,254 - EX31_RS15370 0.26 -0.8
25,294 + EX31_RS15370 0.30 +1.0
25,294 + EX31_RS15370 0.30 +0.1
25,295 - EX31_RS15370 0.30 -1.3
25,328 + EX31_RS15370 0.33 -0.6
25,329 - EX31_RS15370 0.33 -1.0
25,361 + EX31_RS15370 0.35 +0.7
25,373 + EX31_RS15370 0.36 +1.1
25,373 + EX31_RS15370 0.36 +0.9
25,373 + EX31_RS15370 0.36 -0.5
25,374 - EX31_RS15370 0.36 +1.3
25,450 + EX31_RS15370 0.43 -0.2
25,450 + EX31_RS15370 0.43 -0.0
25,450 + EX31_RS15370 0.43 +0.2
25,450 + EX31_RS15370 0.43 -1.2
25,451 - EX31_RS15370 0.43 -1.6
25,451 - EX31_RS15370 0.43 -0.0
25,472 + EX31_RS15370 0.45 +0.8
25,472 + EX31_RS15370 0.45 -0.0
25,499 + EX31_RS15370 0.47 -0.0
25,499 + EX31_RS15370 0.47 +0.4
25,500 - EX31_RS15370 0.47 +1.3
25,511 + EX31_RS15370 0.48 -2.2
25,522 + EX31_RS15370 0.49 +1.2
25,552 + EX31_RS15370 0.51 -0.6
25,552 + EX31_RS15370 0.51 -1.7
25,552 + EX31_RS15370 0.51 +2.2
25,552 + EX31_RS15370 0.51 -0.8
25,552 + EX31_RS15370 0.51 +0.2
25,552 + EX31_RS15370 0.51 -1.5
25,552 + EX31_RS15370 0.51 -0.0
25,552 + EX31_RS15370 0.51 +1.0
25,552 + EX31_RS15370 0.51 +0.1
25,553 - EX31_RS15370 0.51 +2.6
25,553 - EX31_RS15370 0.51 +1.4
25,553 - EX31_RS15370 0.51 +1.0
25,553 - EX31_RS15370 0.51 -0.0
25,553 - EX31_RS15370 0.51 +3.6
25,721 + EX31_RS15370 0.65 -1.0
25,721 + EX31_RS15370 0.65 -1.2
25,974 + EX31_RS15370 0.86 +0.5
25,974 + EX31_RS15370 0.86 -3.0
25,974 + EX31_RS15370 0.86 -2.0
25,976 + EX31_RS15370 0.86 -0.6
25,977 - EX31_RS15370 0.87 +0.3
26,045 + +0.2
26,046 - +0.3
26,046 - -1.2
26,397 + EX31_RS15375 0.76 -0.9
26,398 - EX31_RS15375 0.76 +0.2
26,398 - EX31_RS15375 0.76 +1.0
26,419 + EX31_RS15375 0.82 +0.5
26,419 + EX31_RS15375 0.82 +1.0
26,420 - EX31_RS15375 0.83 +0.6
26,468 + +1.1
26,468 + -0.6
26,468 + -0.2
26,469 - +1.4
26,469 - -1.6
26,469 - +0.3
26,524 + EX31_RS15380 0.11 -0.8
26,525 - EX31_RS15380 0.11 -2.8
26,537 + EX31_RS15380 0.14 +0.7
26,538 - EX31_RS15380 0.14 -0.6
26,566 + EX31_RS15380 0.20 -0.7
26,566 + EX31_RS15380 0.20 -0.0
26,566 + EX31_RS15380 0.20 +0.8
26,566 + EX31_RS15380 0.20 +0.3
26,566 + EX31_RS15380 0.20 -1.6
26,567 - EX31_RS15380 0.21 -0.2
26,592 + EX31_RS15380 0.26 -0.0
26,592 + EX31_RS15380 0.26 +0.4
26,592 + EX31_RS15380 0.26 -2.2
26,593 - EX31_RS15380 0.27 +0.8
26,596 + EX31_RS15380 0.27 +1.7
26,596 + EX31_RS15380 0.27 +0.1
26,596 + EX31_RS15380 0.27 -0.1
26,596 + EX31_RS15380 0.27 -2.5
26,596 + EX31_RS15380 0.27 +1.2
26,596 + EX31_RS15380 0.27 -0.5
26,596 + EX31_RS15380 0.27 -1.8
26,596 + EX31_RS15380 0.27 -0.4
26,596 + EX31_RS15380 0.27 +1.0
26,597 - EX31_RS15380 0.27 +1.0
26,597 - EX31_RS15380 0.27 -2.2
26,597 - EX31_RS15380 0.27 +0.7
26,597 - EX31_RS15380 0.27 -1.3
26,597 - EX31_RS15380 0.27 -0.2
26,597 - EX31_RS15380 0.27 +0.6
26,597 - EX31_RS15380 0.27 -1.0
26,597 - EX31_RS15380 0.27 -0.0
26,597 - EX31_RS15380 0.27 +1.5
26,597 - EX31_RS15380 0.27 +0.2
26,634 + EX31_RS15380 0.36 +0.7
26,634 + EX31_RS15380 0.36 -0.6
26,634 + EX31_RS15380 0.36 +1.4
26,635 - EX31_RS15380 0.36 -0.6
26,635 - EX31_RS15380 0.36 +0.2
26,635 - EX31_RS15380 0.36 +2.1
26,635 - EX31_RS15380 0.36 -0.3
26,635 - EX31_RS15380 0.36 -0.5
26,635 - EX31_RS15380 0.36 +0.8
26,635 - EX31_RS15380 0.36 -0.2
26,844 + EX31_RS15380 0.83 -0.8
26,869 + EX31_RS15380 0.89 +1.6
26,920 + -1.1
26,920 + +0.7
26,920 + +1.4
26,920 + +0.4
26,920 + +0.3
26,921 - +1.0
26,939 + +0.6
27,005 + EX31_RS15385 0.11 -0.7
27,005 + EX31_RS15385 0.11 +0.6
27,005 + EX31_RS15385 0.11 +0.6
27,005 + EX31_RS15385 0.11 +1.2
27,046 - EX31_RS15385 0.16 -1.3
27,046 - EX31_RS15385 0.16 +0.4
27,180 + EX31_RS15385 0.33 -0.0
27,180 + EX31_RS15385 0.33 +1.0
27,180 + EX31_RS15385 0.33 +0.6
27,180 + EX31_RS15385 0.33 +1.4
27,180 + EX31_RS15385 0.33 +1.0
27,183 + EX31_RS15385 0.34 +1.4
27,183 + EX31_RS15385 0.34 +1.4
27,183 + EX31_RS15385 0.34 +1.3
27,183 + EX31_RS15385 0.34 +1.6
27,183 + EX31_RS15385 0.34 +0.5
27,183 + EX31_RS15385 0.34 +0.1
27,184 - EX31_RS15385 0.34 +1.9
27,184 - EX31_RS15385 0.34 +0.6
27,184 - EX31_RS15385 0.34 -1.6
27,184 - EX31_RS15385 0.34 +1.8
27,210 + EX31_RS15385 0.37 +0.4
27,211 - EX31_RS15385 0.37 -0.5
27,211 - EX31_RS15385 0.37 +1.0
27,211 - EX31_RS15385 0.37 -0.0
27,308 + EX31_RS15385 0.49 -1.1
27,308 + EX31_RS15385 0.49 +1.1
27,308 + EX31_RS15385 0.49 +1.3

Or see this region's nucleotide sequence