Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS13555 and EX31_RS13560 are separated by 123 nucleotides EX31_RS13560 and EX31_RS13565 are separated by 257 nucleotides EX31_RS13565 and EX31_RS13570 are separated by 10 nucleotides EX31_RS13570 and EX31_RS13575 overlap by 19 nucleotides
EX31_RS13555: EX31_RS13555 - PLP-dependent aminotransferase family protein, at 145,929 to 147,380
_RS13555
EX31_RS13560: EX31_RS13560 - carboxymuconolactone decarboxylase family protein, at 147,504 to 147,935
_RS13560
EX31_RS13565: EX31_RS13565 - glutaredoxin-like protein NrdH, at 148,193 to 148,432
_RS13565
EX31_RS13570: EX31_RS13570 - class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI, at 148,443 to 148,847
_RS13570
EX31_RS13575: EX31_RS13575 - class 1b ribonucleoside-diphosphate reductase subunit alpha, at 148,829 to 150,991
_RS13575
Position (kb) 148
149 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 147.197 kb on - strand, within EX31_RS13555 at 147.275 kb on + strand at 147.276 kb on - strand at 147.313 kb on + strand at 147.314 kb on - strand at 147.407 kb on - strand at 147.417 kb on - strand at 147.417 kb on - strand at 147.417 kb on - strand at 147.419 kb on + strand at 147.420 kb on - strand at 147.421 kb on + strand at 147.421 kb on + strand at 147.422 kb on - strand at 147.422 kb on - strand at 147.428 kb on + strand at 147.429 kb on - strand at 147.429 kb on - strand at 147.437 kb on + strand at 147.437 kb on + strand at 147.437 kb on + strand at 147.438 kb on - strand at 147.438 kb on - strand at 147.525 kb on + strand at 147.525 kb on + strand at 147.526 kb on - strand at 147.526 kb on - strand at 147.528 kb on + strand at 147.528 kb on + strand at 147.528 kb on + strand at 147.528 kb on + strand at 147.528 kb on + strand at 147.528 kb on + strand at 147.528 kb on + strand at 147.529 kb on - strand at 147.529 kb on - strand at 147.529 kb on - strand at 147.529 kb on - strand at 147.529 kb on - strand at 147.529 kb on - strand at 147.529 kb on - strand at 147.529 kb on - strand at 147.529 kb on - strand at 147.529 kb on - strand at 147.529 kb on - strand at 147.529 kb on - strand at 147.641 kb on + strand, within EX31_RS13560 at 147.687 kb on - strand, within EX31_RS13560 at 147.687 kb on - strand, within EX31_RS13560 at 147.687 kb on - strand, within EX31_RS13560 at 147.747 kb on + strand, within EX31_RS13560 at 147.747 kb on + strand, within EX31_RS13560 at 147.747 kb on + strand, within EX31_RS13560 at 147.747 kb on + strand, within EX31_RS13560 at 147.748 kb on - strand, within EX31_RS13560 at 148.036 kb on + strand at 148.036 kb on + strand at 148.037 kb on - strand at 148.037 kb on - strand at 148.244 kb on + strand, within EX31_RS13565 at 148.245 kb on - strand, within EX31_RS13565 at 148.254 kb on + strand, within EX31_RS13565 at 148.254 kb on + strand, within EX31_RS13565 at 148.254 kb on + strand, within EX31_RS13565 at 148.254 kb on + strand, within EX31_RS13565 at 148.255 kb on - strand, within EX31_RS13565 at 148.255 kb on - strand, within EX31_RS13565 at 148.255 kb on - strand, within EX31_RS13565 at 148.258 kb on + strand, within EX31_RS13565 at 148.258 kb on + strand, within EX31_RS13565 at 148.259 kb on - strand, within EX31_RS13565 at 148.275 kb on - strand, within EX31_RS13565 at 148.275 kb on - strand, within EX31_RS13565 at 148.334 kb on + strand, within EX31_RS13565 at 148.334 kb on + strand, within EX31_RS13565 at 148.458 kb on + strand at 148.531 kb on + strand, within EX31_RS13570 at 148.531 kb on + strand, within EX31_RS13570 at 148.564 kb on + strand, within EX31_RS13570 at 148.564 kb on + strand, within EX31_RS13570 at 148.564 kb on + strand, within EX31_RS13570 at 148.565 kb on - strand, within EX31_RS13570 at 148.569 kb on + strand, within EX31_RS13570 at 148.569 kb on + strand, within EX31_RS13570 at 148.569 kb on + strand, within EX31_RS13570 at 148.569 kb on + strand, within EX31_RS13570 at 148.570 kb on - strand, within EX31_RS13570 at 148.570 kb on - strand, within EX31_RS13570 at 148.570 kb on - strand, within EX31_RS13570 at 148.570 kb on - strand, within EX31_RS13570 at 148.570 kb on - strand, within EX31_RS13570 at 148.572 kb on - strand, within EX31_RS13570 at 148.572 kb on - strand, within EX31_RS13570 at 148.572 kb on - strand, within EX31_RS13570 at 148.655 kb on + strand, within EX31_RS13570 at 148.655 kb on + strand, within EX31_RS13570 at 148.655 kb on + strand, within EX31_RS13570 at 148.713 kb on + strand, within EX31_RS13570 at 148.713 kb on + strand, within EX31_RS13570 at 148.713 kb on + strand, within EX31_RS13570 at 148.713 kb on + strand, within EX31_RS13570 at 148.714 kb on - strand, within EX31_RS13570 at 148.714 kb on - strand, within EX31_RS13570 at 148.714 kb on - strand, within EX31_RS13570 at 148.714 kb on - strand, within EX31_RS13570 at 148.718 kb on + strand, within EX31_RS13570 at 148.718 kb on + strand, within EX31_RS13570 at 148.718 kb on + strand, within EX31_RS13570 at 148.719 kb on - strand, within EX31_RS13570 at 148.719 kb on - strand, within EX31_RS13570 at 148.733 kb on + strand, within EX31_RS13570 at 148.733 kb on + strand, within EX31_RS13570 at 148.733 kb on + strand, within EX31_RS13570 at 148.734 kb on - strand, within EX31_RS13570 at 148.734 kb on - strand, within EX31_RS13570 at 148.734 kb on - strand, within EX31_RS13570 at 148.758 kb on + strand, within EX31_RS13570 at 148.758 kb on + strand, within EX31_RS13570 at 148.759 kb on - strand, within EX31_RS13570 at 148.845 kb on + strand at 148.845 kb on + strand at 148.846 kb on - strand at 148.846 kb on - strand at 148.846 kb on - strand at 148.846 kb on - strand at 148.846 kb on - strand at 148.852 kb on + strand at 148.853 kb on - strand at 148.880 kb on + strand at 148.881 kb on - strand at 148.891 kb on + strand at 148.965 kb on - strand at 148.965 kb on - strand at 149.027 kb on + strand at 149.045 kb on + strand at 149.046 kb on - strand, within EX31_RS13575 at 149.046 kb on - strand, within EX31_RS13575 at 149.048 kb on + strand, within EX31_RS13575 at 149.049 kb on - strand, within EX31_RS13575 at 149.049 kb on - strand, within EX31_RS13575 at 149.086 kb on + strand, within EX31_RS13575 at 149.087 kb on - strand, within EX31_RS13575 at 149.089 kb on + strand, within EX31_RS13575 at 149.090 kb on - strand, within EX31_RS13575 at 149.090 kb on - strand, within EX31_RS13575 at 149.090 kb on - strand, within EX31_RS13575 at 149.111 kb on + strand, within EX31_RS13575 at 149.111 kb on + strand, within EX31_RS13575 at 149.111 kb on + strand, within EX31_RS13575 at 149.112 kb on - strand, within EX31_RS13575 at 149.112 kb on - strand, within EX31_RS13575 at 149.156 kb on + strand, within EX31_RS13575 at 149.156 kb on + strand, within EX31_RS13575 at 149.156 kb on + strand, within EX31_RS13575 at 149.157 kb on - strand, within EX31_RS13575 at 149.157 kb on - strand, within EX31_RS13575 at 149.157 kb on - strand, within EX31_RS13575 at 149.157 kb on - strand, within EX31_RS13575 at 149.159 kb on + strand, within EX31_RS13575 at 149.159 kb on + strand, within EX31_RS13575 at 149.159 kb on + strand, within EX31_RS13575 at 149.159 kb on + strand, within EX31_RS13575 at 149.160 kb on - strand, within EX31_RS13575 at 149.160 kb on - strand, within EX31_RS13575 at 149.160 kb on - strand, within EX31_RS13575 at 149.160 kb on - strand, within EX31_RS13575 at 149.168 kb on + strand, within EX31_RS13575 at 149.169 kb on - strand, within EX31_RS13575 at 149.169 kb on - strand, within EX31_RS13575 at 149.198 kb on + strand, within EX31_RS13575 at 149.198 kb on + strand, within EX31_RS13575 at 149.199 kb on - strand, within EX31_RS13575
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 147,197 - EX31_RS13555 0.87 -0.9 147,275 + +1.1 147,276 - -2.1 147,313 + -0.2 147,314 - +1.5 147,407 - -0.4 147,417 - +0.9 147,417 - -0.2 147,417 - -0.8 147,419 + -0.5 147,420 - -0.1 147,421 + +2.2 147,421 + -0.4 147,422 - -0.3 147,422 - +0.5 147,428 + -0.0 147,429 - +0.1 147,429 - +1.8 147,437 + +0.1 147,437 + -0.6 147,437 + +0.8 147,438 - -1.0 147,438 - -1.2 147,525 + +0.6 147,525 + -0.3 147,526 - -0.4 147,526 - -1.0 147,528 + +1.1 147,528 + +1.5 147,528 + +0.3 147,528 + +0.9 147,528 + -1.7 147,528 + -0.7 147,528 + +1.6 147,529 - -1.2 147,529 - -0.1 147,529 - +0.2 147,529 - +0.6 147,529 - +0.7 147,529 - +1.0 147,529 - -0.6 147,529 - +1.1 147,529 - -1.1 147,529 - -3.3 147,529 - -0.4 147,529 - -0.3 147,641 + EX31_RS13560 0.32 +0.4 147,687 - EX31_RS13560 0.42 -0.1 147,687 - EX31_RS13560 0.42 +0.3 147,687 - EX31_RS13560 0.42 +0.1 147,747 + EX31_RS13560 0.56 +0.5 147,747 + EX31_RS13560 0.56 +2.2 147,747 + EX31_RS13560 0.56 +0.2 147,747 + EX31_RS13560 0.56 +0.8 147,748 - EX31_RS13560 0.56 +0.5 148,036 + -1.1 148,036 + -0.3 148,037 - +1.1 148,037 - +0.2 148,244 + EX31_RS13565 0.21 -0.1 148,245 - EX31_RS13565 0.22 +0.2 148,254 + EX31_RS13565 0.25 -0.4 148,254 + EX31_RS13565 0.25 +0.0 148,254 + EX31_RS13565 0.25 +0.9 148,254 + EX31_RS13565 0.25 -0.5 148,255 - EX31_RS13565 0.26 -1.9 148,255 - EX31_RS13565 0.26 -0.2 148,255 - EX31_RS13565 0.26 +0.9 148,258 + EX31_RS13565 0.27 +0.6 148,258 + EX31_RS13565 0.27 -1.7 148,259 - EX31_RS13565 0.28 -2.4 148,275 - EX31_RS13565 0.34 -0.1 148,275 - EX31_RS13565 0.34 -0.4 148,334 + EX31_RS13565 0.59 -3.3 148,334 + EX31_RS13565 0.59 -0.1 148,458 + +0.8 148,531 + EX31_RS13570 0.22 +0.1 148,531 + EX31_RS13570 0.22 -0.5 148,564 + EX31_RS13570 0.30 -0.5 148,564 + EX31_RS13570 0.30 +1.2 148,564 + EX31_RS13570 0.30 -1.4 148,565 - EX31_RS13570 0.30 -0.3 148,569 + EX31_RS13570 0.31 -0.3 148,569 + EX31_RS13570 0.31 +0.1 148,569 + EX31_RS13570 0.31 +0.8 148,569 + EX31_RS13570 0.31 +0.2 148,570 - EX31_RS13570 0.31 +0.5 148,570 - EX31_RS13570 0.31 +0.9 148,570 - EX31_RS13570 0.31 -1.4 148,570 - EX31_RS13570 0.31 +1.0 148,570 - EX31_RS13570 0.31 -1.0 148,572 - EX31_RS13570 0.32 +0.1 148,572 - EX31_RS13570 0.32 +0.5 148,572 - EX31_RS13570 0.32 +0.7 148,655 + EX31_RS13570 0.52 -0.3 148,655 + EX31_RS13570 0.52 -0.9 148,655 + EX31_RS13570 0.52 +0.3 148,713 + EX31_RS13570 0.67 +1.0 148,713 + EX31_RS13570 0.67 -0.4 148,713 + EX31_RS13570 0.67 +1.4 148,713 + EX31_RS13570 0.67 -1.8 148,714 - EX31_RS13570 0.67 +0.7 148,714 - EX31_RS13570 0.67 +0.1 148,714 - EX31_RS13570 0.67 +1.2 148,714 - EX31_RS13570 0.67 +0.6 148,718 + EX31_RS13570 0.68 +0.2 148,718 + EX31_RS13570 0.68 -0.5 148,718 + EX31_RS13570 0.68 +0.5 148,719 - EX31_RS13570 0.68 -0.2 148,719 - EX31_RS13570 0.68 -0.6 148,733 + EX31_RS13570 0.72 +0.1 148,733 + EX31_RS13570 0.72 +0.4 148,733 + EX31_RS13570 0.72 -0.2 148,734 - EX31_RS13570 0.72 +0.1 148,734 - EX31_RS13570 0.72 +1.1 148,734 - EX31_RS13570 0.72 +0.9 148,758 + EX31_RS13570 0.78 -0.4 148,758 + EX31_RS13570 0.78 +0.6 148,759 - EX31_RS13570 0.78 +0.0 148,845 + -0.1 148,845 + -0.7 148,846 - -1.4 148,846 - -0.4 148,846 - -0.3 148,846 - +0.3 148,846 - -1.9 148,852 + +0.6 148,853 - +0.9 148,880 + +0.0 148,881 - -1.1 148,891 + +0.6 148,965 - -1.2 148,965 - -0.5 149,027 + -1.9 149,045 + -0.8 149,046 - EX31_RS13575 0.10 +1.4 149,046 - EX31_RS13575 0.10 +0.9 149,048 + EX31_RS13575 0.10 +1.6 149,049 - EX31_RS13575 0.10 -0.1 149,049 - EX31_RS13575 0.10 -2.3 149,086 + EX31_RS13575 0.12 +0.4 149,087 - EX31_RS13575 0.12 -0.6 149,089 + EX31_RS13575 0.12 +1.1 149,090 - EX31_RS13575 0.12 +0.8 149,090 - EX31_RS13575 0.12 -1.6 149,090 - EX31_RS13575 0.12 +0.9 149,111 + EX31_RS13575 0.13 -0.1 149,111 + EX31_RS13575 0.13 -0.0 149,111 + EX31_RS13575 0.13 -0.3 149,112 - EX31_RS13575 0.13 +1.6 149,112 - EX31_RS13575 0.13 -1.0 149,156 + EX31_RS13575 0.15 -1.4 149,156 + EX31_RS13575 0.15 -0.2 149,156 + EX31_RS13575 0.15 -0.5 149,157 - EX31_RS13575 0.15 +0.8 149,157 - EX31_RS13575 0.15 -0.7 149,157 - EX31_RS13575 0.15 +0.9 149,157 - EX31_RS13575 0.15 -1.4 149,159 + EX31_RS13575 0.15 -0.1 149,159 + EX31_RS13575 0.15 +2.2 149,159 + EX31_RS13575 0.15 +0.9 149,159 + EX31_RS13575 0.15 +1.2 149,160 - EX31_RS13575 0.15 +0.2 149,160 - EX31_RS13575 0.15 +1.4 149,160 - EX31_RS13575 0.15 -1.7 149,160 - EX31_RS13575 0.15 -1.7 149,168 + EX31_RS13575 0.16 -3.0 149,169 - EX31_RS13575 0.16 -0.5 149,169 - EX31_RS13575 0.16 +0.8 149,198 + EX31_RS13575 0.17 -1.0 149,198 + EX31_RS13575 0.17 +0.2 149,199 - EX31_RS13575 0.17 -1.1
Or see this region's nucleotide sequence