Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS11105 and EX31_RS11110 overlap by 11 nucleotides EX31_RS11110 and EX31_RS11115 are separated by 29 nucleotides EX31_RS11115 and EX31_RS11120 are separated by 13 nucleotides EX31_RS11120 and EX31_RS11125 overlap by 4 nucleotides
EX31_RS11105: EX31_RS11105 - cytosine deaminase, at 151,546 to 152,826
_RS11105
EX31_RS11110: EX31_RS11110 - RidA family protein, at 152,816 to 153,277
_RS11110
EX31_RS11115: EX31_RS11115 - creatininase family protein, at 153,307 to 154,188
_RS11115
EX31_RS11120: EX31_RS11120 - ABC transporter substrate-binding protein, at 154,202 to 155,185
_RS11120
EX31_RS11125: EX31_RS11125 - ABC transporter ATP-binding protein, at 155,182 to 156,009
_RS11125
Position (kb) 153
154
155 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 152.522 kb on + strand, within EX31_RS11105 at 152.522 kb on + strand, within EX31_RS11105 at 152.551 kb on + strand, within EX31_RS11105 at 152.551 kb on + strand, within EX31_RS11105 at 152.565 kb on + strand, within EX31_RS11105 at 152.565 kb on + strand, within EX31_RS11105 at 152.793 kb on + strand at 152.793 kb on + strand at 152.793 kb on + strand at 152.855 kb on + strand at 152.856 kb on - strand at 153.039 kb on - strand, within EX31_RS11110 at 153.039 kb on - strand, within EX31_RS11110 at 153.143 kb on + strand, within EX31_RS11110 at 153.320 kb on - strand at 153.520 kb on + strand, within EX31_RS11115 at 153.520 kb on + strand, within EX31_RS11115 at 153.521 kb on - strand, within EX31_RS11115 at 153.541 kb on + strand, within EX31_RS11115 at 153.564 kb on - strand, within EX31_RS11115 at 153.849 kb on - strand, within EX31_RS11115 at 154.226 kb on + strand at 154.227 kb on - strand at 154.227 kb on - strand at 154.227 kb on - strand at 154.227 kb on - strand at 154.227 kb on - strand at 154.227 kb on - strand at 154.227 kb on - strand at 154.227 kb on - strand at 154.358 kb on + strand, within EX31_RS11120 at 154.359 kb on - strand, within EX31_RS11120 at 154.519 kb on - strand, within EX31_RS11120 at 154.543 kb on + strand, within EX31_RS11120 at 154.543 kb on + strand, within EX31_RS11120 at 154.613 kb on + strand, within EX31_RS11120 at 154.613 kb on + strand, within EX31_RS11120 at 154.613 kb on + strand, within EX31_RS11120 at 154.613 kb on + strand, within EX31_RS11120 at 154.614 kb on - strand, within EX31_RS11120 at 154.614 kb on - strand, within EX31_RS11120 at 154.614 kb on - strand, within EX31_RS11120 at 154.614 kb on - strand, within EX31_RS11120 at 154.614 kb on - strand, within EX31_RS11120 at 154.615 kb on + strand, within EX31_RS11120 at 154.615 kb on + strand, within EX31_RS11120 at 154.615 kb on + strand, within EX31_RS11120 at 154.615 kb on + strand, within EX31_RS11120 at 154.616 kb on - strand, within EX31_RS11120 at 154.616 kb on - strand, within EX31_RS11120 at 154.616 kb on - strand, within EX31_RS11120 at 154.616 kb on - strand, within EX31_RS11120 at 154.677 kb on - strand, within EX31_RS11120 at 154.711 kb on + strand, within EX31_RS11120 at 154.711 kb on + strand, within EX31_RS11120 at 154.711 kb on + strand, within EX31_RS11120 at 154.730 kb on + strand, within EX31_RS11120 at 154.731 kb on - strand, within EX31_RS11120 at 154.778 kb on + strand, within EX31_RS11120 at 154.778 kb on + strand, within EX31_RS11120 at 154.778 kb on + strand, within EX31_RS11120 at 154.778 kb on + strand, within EX31_RS11120 at 154.778 kb on + strand, within EX31_RS11120 at 154.778 kb on + strand, within EX31_RS11120 at 154.779 kb on - strand, within EX31_RS11120 at 154.779 kb on - strand, within EX31_RS11120 at 154.784 kb on + strand, within EX31_RS11120 at 154.784 kb on + strand, within EX31_RS11120 at 154.784 kb on + strand, within EX31_RS11120 at 154.785 kb on - strand, within EX31_RS11120 at 154.785 kb on - strand, within EX31_RS11120 at 154.785 kb on - strand, within EX31_RS11120 at 154.785 kb on - strand, within EX31_RS11120 at 154.828 kb on + strand, within EX31_RS11120 at 154.828 kb on + strand, within EX31_RS11120 at 154.828 kb on + strand, within EX31_RS11120 at 154.829 kb on - strand, within EX31_RS11120 at 154.910 kb on + strand, within EX31_RS11120 at 154.910 kb on + strand, within EX31_RS11120 at 154.942 kb on + strand, within EX31_RS11120 at 155.009 kb on + strand, within EX31_RS11120 at 155.009 kb on + strand, within EX31_RS11120 at 155.009 kb on + strand, within EX31_RS11120 at 155.009 kb on + strand, within EX31_RS11120 at 155.009 kb on + strand, within EX31_RS11120 at 155.009 kb on + strand, within EX31_RS11120 at 155.009 kb on + strand, within EX31_RS11120 at 155.009 kb on + strand, within EX31_RS11120 at 155.009 kb on + strand, within EX31_RS11120 at 155.009 kb on + strand, within EX31_RS11120 at 155.009 kb on + strand, within EX31_RS11120 at 155.009 kb on + strand, within EX31_RS11120 at 155.010 kb on - strand, within EX31_RS11120 at 155.010 kb on - strand, within EX31_RS11120 at 155.144 kb on + strand at 155.144 kb on + strand at 155.144 kb on + strand at 155.144 kb on + strand at 155.144 kb on + strand at 155.144 kb on + strand at 155.144 kb on + strand at 155.144 kb on + strand at 155.145 kb on - strand at 155.145 kb on - strand at 155.145 kb on - strand at 155.145 kb on - strand at 155.145 kb on - strand at 155.145 kb on - strand at 155.145 kb on - strand at 155.146 kb on + strand at 155.146 kb on + strand at 155.177 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 152,522 + EX31_RS11105 0.76 -0.8 152,522 + EX31_RS11105 0.76 -0.3 152,551 + EX31_RS11105 0.78 +0.1 152,551 + EX31_RS11105 0.78 -1.6 152,565 + EX31_RS11105 0.80 +0.5 152,565 + EX31_RS11105 0.80 +0.7 152,793 + -1.4 152,793 + -0.3 152,793 + +0.7 152,855 + +1.3 152,856 - +0.2 153,039 - EX31_RS11110 0.48 -1.8 153,039 - EX31_RS11110 0.48 -0.5 153,143 + EX31_RS11110 0.71 -2.1 153,320 - +0.7 153,520 + EX31_RS11115 0.24 -0.4 153,520 + EX31_RS11115 0.24 +0.4 153,521 - EX31_RS11115 0.24 -1.4 153,541 + EX31_RS11115 0.27 -0.5 153,564 - EX31_RS11115 0.29 +0.7 153,849 - EX31_RS11115 0.61 -1.3 154,226 + +3.1 154,227 - +1.2 154,227 - -1.3 154,227 - +0.7 154,227 - +0.7 154,227 - +0.5 154,227 - +2.7 154,227 - +0.3 154,227 - -3.0 154,358 + EX31_RS11120 0.16 -0.8 154,359 - EX31_RS11120 0.16 +0.5 154,519 - EX31_RS11120 0.32 +0.9 154,543 + EX31_RS11120 0.35 +1.5 154,543 + EX31_RS11120 0.35 -0.1 154,613 + EX31_RS11120 0.42 +0.4 154,613 + EX31_RS11120 0.42 -1.6 154,613 + EX31_RS11120 0.42 -0.2 154,613 + EX31_RS11120 0.42 +0.7 154,614 - EX31_RS11120 0.42 +0.3 154,614 - EX31_RS11120 0.42 +0.0 154,614 - EX31_RS11120 0.42 -1.3 154,614 - EX31_RS11120 0.42 +0.6 154,614 - EX31_RS11120 0.42 +0.1 154,615 + EX31_RS11120 0.42 +0.7 154,615 + EX31_RS11120 0.42 +0.3 154,615 + EX31_RS11120 0.42 -0.8 154,615 + EX31_RS11120 0.42 -0.1 154,616 - EX31_RS11120 0.42 -0.6 154,616 - EX31_RS11120 0.42 +0.3 154,616 - EX31_RS11120 0.42 -0.3 154,616 - EX31_RS11120 0.42 -1.8 154,677 - EX31_RS11120 0.48 +0.5 154,711 + EX31_RS11120 0.52 -0.6 154,711 + EX31_RS11120 0.52 +1.7 154,711 + EX31_RS11120 0.52 +1.5 154,730 + EX31_RS11120 0.54 -0.8 154,731 - EX31_RS11120 0.54 +0.7 154,778 + EX31_RS11120 0.59 -0.5 154,778 + EX31_RS11120 0.59 -1.9 154,778 + EX31_RS11120 0.59 +0.2 154,778 + EX31_RS11120 0.59 +1.4 154,778 + EX31_RS11120 0.59 -2.3 154,778 + EX31_RS11120 0.59 -0.6 154,779 - EX31_RS11120 0.59 -0.8 154,779 - EX31_RS11120 0.59 -0.1 154,784 + EX31_RS11120 0.59 -0.6 154,784 + EX31_RS11120 0.59 -2.3 154,784 + EX31_RS11120 0.59 +0.2 154,785 - EX31_RS11120 0.59 -1.4 154,785 - EX31_RS11120 0.59 +0.3 154,785 - EX31_RS11120 0.59 -1.6 154,785 - EX31_RS11120 0.59 -0.4 154,828 + EX31_RS11120 0.64 -0.3 154,828 + EX31_RS11120 0.64 +0.2 154,828 + EX31_RS11120 0.64 +1.4 154,829 - EX31_RS11120 0.64 +0.7 154,910 + EX31_RS11120 0.72 +0.2 154,910 + EX31_RS11120 0.72 +0.3 154,942 + EX31_RS11120 0.75 -0.6 155,009 + EX31_RS11120 0.82 -1.6 155,009 + EX31_RS11120 0.82 -0.3 155,009 + EX31_RS11120 0.82 -0.4 155,009 + EX31_RS11120 0.82 -0.3 155,009 + EX31_RS11120 0.82 +0.3 155,009 + EX31_RS11120 0.82 -1.4 155,009 + EX31_RS11120 0.82 +0.9 155,009 + EX31_RS11120 0.82 +1.3 155,009 + EX31_RS11120 0.82 -0.5 155,009 + EX31_RS11120 0.82 +0.2 155,009 + EX31_RS11120 0.82 +1.2 155,009 + EX31_RS11120 0.82 -2.3 155,010 - EX31_RS11120 0.82 -0.5 155,010 - EX31_RS11120 0.82 +0.7 155,144 + -1.8 155,144 + +0.7 155,144 + +2.3 155,144 + -0.6 155,144 + -0.3 155,144 + -0.3 155,144 + -1.8 155,144 + -0.8 155,145 - +0.7 155,145 - +0.2 155,145 - +1.5 155,145 - -1.3 155,145 - +0.2 155,145 - -0.6 155,145 - +0.7 155,146 + +0.3 155,146 + +1.1 155,177 - +0.3
Or see this region's nucleotide sequence