Strain Fitness in Rahnella sp. WP5 around EX31_RS11100

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS11095 and EX31_RS11100 are separated by 214 nucleotidesEX31_RS11100 and EX31_RS11105 are separated by 20 nucleotides EX31_RS11095: EX31_RS11095 - LysR family transcriptional regulator, at 149,413 to 150,336 _RS11095 EX31_RS11100: EX31_RS11100 - oxidoreductase, at 150,551 to 151,525 _RS11100 EX31_RS11105: EX31_RS11105 - cytosine deaminase, at 151,546 to 152,826 _RS11105 Position (kb) 150 151 152Strain fitness (log2 ratio) -2 -1 0 1 2 3at 150.274 kb on - strandat 150.308 kb on + strandat 150.309 kb on - strandat 150.337 kb on - strandat 150.406 kb on - strandat 150.411 kb on - strandat 150.411 kb on - strandat 150.602 kb on - strandat 150.602 kb on - strandat 150.620 kb on - strandat 150.620 kb on - strandat 150.752 kb on + strand, within EX31_RS11100at 150.753 kb on - strand, within EX31_RS11100at 150.888 kb on - strand, within EX31_RS11100at 150.888 kb on - strand, within EX31_RS11100at 151.087 kb on + strand, within EX31_RS11100at 151.156 kb on + strand, within EX31_RS11100at 151.156 kb on + strand, within EX31_RS11100at 151.210 kb on - strand, within EX31_RS11100at 151.280 kb on - strand, within EX31_RS11100at 151.298 kb on + strand, within EX31_RS11100at 151.335 kb on + strand, within EX31_RS11100at 151.335 kb on + strand, within EX31_RS11100at 151.336 kb on - strand, within EX31_RS11100at 151.338 kb on + strand, within EX31_RS11100at 151.338 kb on + strand, within EX31_RS11100at 151.357 kb on + strand, within EX31_RS11100at 151.357 kb on + strand, within EX31_RS11100at 151.357 kb on + strand, within EX31_RS11100at 151.357 kb on + strand, within EX31_RS11100at 151.358 kb on - strand, within EX31_RS11100at 151.397 kb on - strand, within EX31_RS11100at 151.523 kb on + strandat 151.524 kb on - strandat 151.575 kb on + strandat 151.576 kb on - strandat 151.899 kb on + strand, within EX31_RS11105at 152.133 kb on + strand, within EX31_RS11105at 152.298 kb on + strand, within EX31_RS11105at 152.299 kb on - strand, within EX31_RS11105at 152.299 kb on - strand, within EX31_RS11105at 152.522 kb on + strand, within EX31_RS11105at 152.522 kb on + strand, within EX31_RS11105

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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150,274 - -0.1
150,308 + +1.0
150,309 - +0.7
150,337 - +1.3
150,406 - -1.5
150,411 - +1.1
150,411 - -0.1
150,602 - -0.3
150,602 - +1.7
150,620 - +0.5
150,620 - -0.6
150,752 + EX31_RS11100 0.21 -1.6
150,753 - EX31_RS11100 0.21 +1.0
150,888 - EX31_RS11100 0.35 +1.5
150,888 - EX31_RS11100 0.35 +2.1
151,087 + EX31_RS11100 0.55 -2.6
151,156 + EX31_RS11100 0.62 -1.3
151,156 + EX31_RS11100 0.62 +0.3
151,210 - EX31_RS11100 0.68 +0.7
151,280 - EX31_RS11100 0.75 +0.2
151,298 + EX31_RS11100 0.77 +1.0
151,335 + EX31_RS11100 0.80 +0.7
151,335 + EX31_RS11100 0.80 -0.4
151,336 - EX31_RS11100 0.81 -2.4
151,338 + EX31_RS11100 0.81 +1.0
151,338 + EX31_RS11100 0.81 +0.7
151,357 + EX31_RS11100 0.83 -1.6
151,357 + EX31_RS11100 0.83 -0.3
151,357 + EX31_RS11100 0.83 +1.1
151,357 + EX31_RS11100 0.83 -2.3
151,358 - EX31_RS11100 0.83 +0.4
151,397 - EX31_RS11100 0.87 -0.6
151,523 + +0.7
151,524 - +2.9
151,575 + -2.4
151,576 - +0.9
151,899 + EX31_RS11105 0.28 -1.3
152,133 + EX31_RS11105 0.46 +0.2
152,298 + EX31_RS11105 0.59 +1.2
152,299 - EX31_RS11105 0.59 -0.3
152,299 - EX31_RS11105 0.59 +2.9
152,522 + EX31_RS11105 0.76 -0.8
152,522 + EX31_RS11105 0.76 -0.3

Or see this region's nucleotide sequence