Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09785 and EX31_RS09790 are separated by 13 nucleotides EX31_RS09790 and EX31_RS09795 overlap by 1 nucleotides
EX31_RS09785: EX31_RS09785 - autoinducer 2 ABC transporter substrate-binding protein LsrB, at 162,430 to 163,446
_RS09785
EX31_RS09790: EX31_RS09790 - autoinducer 2 ABC transporter permease LsrD, at 163,460 to 164,485
_RS09790
EX31_RS09795: EX31_RS09795 - autoinducer 2 ABC transporter permease LsrC, at 164,485 to 165,561
_RS09795
Position (kb) 163
164
165 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 162.499 kb on - strand at 162.589 kb on - strand, within EX31_RS09785 at 162.608 kb on - strand, within EX31_RS09785 at 162.624 kb on - strand, within EX31_RS09785 at 162.693 kb on - strand, within EX31_RS09785 at 162.714 kb on + strand, within EX31_RS09785 at 162.802 kb on - strand, within EX31_RS09785 at 162.858 kb on + strand, within EX31_RS09785 at 162.859 kb on - strand, within EX31_RS09785 at 162.859 kb on - strand, within EX31_RS09785 at 162.859 kb on - strand, within EX31_RS09785 at 162.870 kb on + strand, within EX31_RS09785 at 162.871 kb on - strand, within EX31_RS09785 at 162.872 kb on + strand, within EX31_RS09785 at 162.879 kb on - strand, within EX31_RS09785 at 162.977 kb on + strand, within EX31_RS09785 at 163.074 kb on - strand, within EX31_RS09785 at 163.074 kb on - strand, within EX31_RS09785 at 163.199 kb on + strand, within EX31_RS09785 at 163.199 kb on + strand, within EX31_RS09785 at 163.200 kb on - strand, within EX31_RS09785 at 163.331 kb on + strand, within EX31_RS09785 at 163.418 kb on - strand at 163.418 kb on - strand at 163.461 kb on + strand at 163.462 kb on - strand at 163.701 kb on + strand, within EX31_RS09790 at 163.701 kb on + strand, within EX31_RS09790 at 163.785 kb on + strand, within EX31_RS09790 at 164.109 kb on + strand, within EX31_RS09790 at 164.110 kb on - strand, within EX31_RS09790 at 164.209 kb on + strand, within EX31_RS09790 at 164.246 kb on + strand, within EX31_RS09790 at 164.381 kb on - strand, within EX31_RS09790 at 164.381 kb on - strand, within EX31_RS09790 at 164.420 kb on + strand at 164.421 kb on - strand at 164.466 kb on + strand at 164.466 kb on + strand at 164.466 kb on + strand at 164.492 kb on - strand at 164.492 kb on - strand at 164.512 kb on - strand at 164.603 kb on + strand, within EX31_RS09795 at 164.603 kb on + strand, within EX31_RS09795 at 164.604 kb on - strand, within EX31_RS09795 at 164.604 kb on - strand, within EX31_RS09795 at 164.604 kb on - strand, within EX31_RS09795 at 164.604 kb on - strand, within EX31_RS09795 at 164.604 kb on - strand, within EX31_RS09795 at 164.657 kb on - strand, within EX31_RS09795 at 164.716 kb on + strand, within EX31_RS09795 at 164.728 kb on + strand, within EX31_RS09795 at 164.728 kb on + strand, within EX31_RS09795 at 164.729 kb on - strand, within EX31_RS09795 at 164.940 kb on + strand, within EX31_RS09795 at 164.941 kb on - strand, within EX31_RS09795 at 164.941 kb on - strand, within EX31_RS09795 at 165.002 kb on + strand, within EX31_RS09795 at 165.003 kb on - strand, within EX31_RS09795 at 165.181 kb on + strand, within EX31_RS09795 at 165.182 kb on - strand, within EX31_RS09795 at 165.182 kb on - strand, within EX31_RS09795 at 165.220 kb on - strand, within EX31_RS09795 at 165.263 kb on - strand, within EX31_RS09795
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 162,499 - +0.3 162,589 - EX31_RS09785 0.16 -1.9 162,608 - EX31_RS09785 0.18 +3.5 162,624 - EX31_RS09785 0.19 -0.1 162,693 - EX31_RS09785 0.26 +1.2 162,714 + EX31_RS09785 0.28 -1.3 162,802 - EX31_RS09785 0.37 -0.9 162,858 + EX31_RS09785 0.42 +1.7 162,859 - EX31_RS09785 0.42 -0.3 162,859 - EX31_RS09785 0.42 +0.5 162,859 - EX31_RS09785 0.42 -1.0 162,870 + EX31_RS09785 0.43 +1.2 162,871 - EX31_RS09785 0.43 -0.2 162,872 + EX31_RS09785 0.43 +1.2 162,879 - EX31_RS09785 0.44 -1.7 162,977 + EX31_RS09785 0.54 +0.7 163,074 - EX31_RS09785 0.63 +0.2 163,074 - EX31_RS09785 0.63 -0.1 163,199 + EX31_RS09785 0.76 -0.3 163,199 + EX31_RS09785 0.76 -1.9 163,200 - EX31_RS09785 0.76 +0.7 163,331 + EX31_RS09785 0.89 -2.1 163,418 - -1.1 163,418 - +2.4 163,461 + -0.3 163,462 - +0.7 163,701 + EX31_RS09790 0.23 -1.9 163,701 + EX31_RS09790 0.23 -1.9 163,785 + EX31_RS09790 0.32 -2.1 164,109 + EX31_RS09790 0.63 +2.0 164,110 - EX31_RS09790 0.63 -2.9 164,209 + EX31_RS09790 0.73 -1.7 164,246 + EX31_RS09790 0.77 -0.5 164,381 - EX31_RS09790 0.90 -2.7 164,381 - EX31_RS09790 0.90 -0.9 164,420 + +0.7 164,421 - -0.3 164,466 + -2.7 164,466 + -2.9 164,466 + -0.9 164,492 - -0.3 164,492 - -0.4 164,512 - +2.2 164,603 + EX31_RS09795 0.11 -1.7 164,603 + EX31_RS09795 0.11 +0.9 164,604 - EX31_RS09795 0.11 -0.5 164,604 - EX31_RS09795 0.11 +2.7 164,604 - EX31_RS09795 0.11 -1.3 164,604 - EX31_RS09795 0.11 +2.2 164,604 - EX31_RS09795 0.11 -0.7 164,657 - EX31_RS09795 0.16 -1.2 164,716 + EX31_RS09795 0.21 +1.2 164,728 + EX31_RS09795 0.23 -1.9 164,728 + EX31_RS09795 0.23 +0.7 164,729 - EX31_RS09795 0.23 -1.7 164,940 + EX31_RS09795 0.42 +0.4 164,941 - EX31_RS09795 0.42 +3.0 164,941 - EX31_RS09795 0.42 -0.9 165,002 + EX31_RS09795 0.48 +1.4 165,003 - EX31_RS09795 0.48 +1.0 165,181 + EX31_RS09795 0.65 -0.6 165,182 - EX31_RS09795 0.65 -0.9 165,182 - EX31_RS09795 0.65 +0.7 165,220 - EX31_RS09795 0.68 +1.7 165,263 - EX31_RS09795 0.72 +0.6
Or see this region's nucleotide sequence