Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09425 and EX31_RS09430 overlap by 4 nucleotides EX31_RS09430 and EX31_RS09435 are separated by 70 nucleotides EX31_RS09435 and EX31_RS09440 are separated by 135 nucleotides
EX31_RS09425: EX31_RS09425 - L-cystine ABC transporter ATP-binding protein YecC, at 95,129 to 95,881
_RS09425
EX31_RS09430: EX31_RS09430 - cystine ABC transporter permease, at 95,878 to 96,546
_RS09430
EX31_RS09435: EX31_RS09435 - cystine ABC transporter substrate-binding protein, at 96,617 to 97,417
_RS09435
EX31_RS09440: EX31_RS09440 - D-cysteine desulfhydrase, at 97,553 to 98,563
_RS09440
Position (kb) 96
97
98 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 95.648 kb on - strand, within EX31_RS09425 at 95.734 kb on + strand, within EX31_RS09425 at 95.735 kb on - strand, within EX31_RS09425 at 95.810 kb on + strand at 95.875 kb on + strand at 95.875 kb on + strand at 95.960 kb on + strand, within EX31_RS09430 at 95.960 kb on + strand, within EX31_RS09430 at 95.960 kb on + strand, within EX31_RS09430 at 95.960 kb on + strand, within EX31_RS09430 at 95.981 kb on + strand, within EX31_RS09430 at 95.982 kb on - strand, within EX31_RS09430 at 95.982 kb on - strand, within EX31_RS09430 at 95.982 kb on - strand, within EX31_RS09430 at 96.168 kb on + strand, within EX31_RS09430 at 96.243 kb on - strand, within EX31_RS09430 at 96.243 kb on - strand, within EX31_RS09430 at 96.320 kb on + strand, within EX31_RS09430 at 96.323 kb on + strand, within EX31_RS09430 at 96.323 kb on + strand, within EX31_RS09430 at 96.323 kb on + strand, within EX31_RS09430 at 96.324 kb on - strand, within EX31_RS09430 at 96.375 kb on - strand, within EX31_RS09430 at 96.445 kb on - strand, within EX31_RS09430 at 96.535 kb on - strand at 96.575 kb on - strand at 96.618 kb on + strand at 96.618 kb on + strand at 96.619 kb on - strand at 96.619 kb on - strand at 96.619 kb on - strand at 96.619 kb on - strand at 96.703 kb on + strand, within EX31_RS09435 at 96.704 kb on - strand, within EX31_RS09435 at 96.787 kb on + strand, within EX31_RS09435 at 96.788 kb on - strand, within EX31_RS09435 at 96.788 kb on - strand, within EX31_RS09435 at 96.875 kb on - strand, within EX31_RS09435 at 96.891 kb on + strand, within EX31_RS09435 at 96.892 kb on - strand, within EX31_RS09435 at 96.892 kb on - strand, within EX31_RS09435 at 96.892 kb on - strand, within EX31_RS09435 at 96.892 kb on - strand, within EX31_RS09435 at 96.892 kb on - strand, within EX31_RS09435 at 96.892 kb on - strand, within EX31_RS09435 at 96.892 kb on - strand, within EX31_RS09435 at 96.892 kb on - strand, within EX31_RS09435 at 96.892 kb on - strand, within EX31_RS09435 at 96.892 kb on - strand, within EX31_RS09435 at 96.895 kb on + strand, within EX31_RS09435 at 96.896 kb on - strand, within EX31_RS09435 at 96.896 kb on - strand, within EX31_RS09435 at 96.940 kb on - strand, within EX31_RS09435 at 96.940 kb on - strand, within EX31_RS09435 at 96.957 kb on - strand, within EX31_RS09435 at 96.957 kb on - strand, within EX31_RS09435 at 97.019 kb on - strand, within EX31_RS09435 at 97.048 kb on - strand, within EX31_RS09435 at 97.048 kb on - strand, within EX31_RS09435 at 97.048 kb on - strand, within EX31_RS09435 at 97.066 kb on - strand, within EX31_RS09435 at 97.066 kb on - strand, within EX31_RS09435 at 97.118 kb on - strand, within EX31_RS09435 at 97.118 kb on - strand, within EX31_RS09435 at 97.118 kb on - strand, within EX31_RS09435 at 97.266 kb on + strand, within EX31_RS09435 at 97.266 kb on + strand, within EX31_RS09435 at 97.267 kb on - strand, within EX31_RS09435 at 97.320 kb on - strand, within EX31_RS09435 at 97.339 kb on + strand at 97.340 kb on - strand at 97.340 kb on - strand at 97.405 kb on + strand at 97.431 kb on - strand at 97.431 kb on - strand at 97.431 kb on - strand at 97.432 kb on + strand at 97.433 kb on - strand at 97.433 kb on - strand at 97.433 kb on - strand at 97.433 kb on - strand at 97.433 kb on - strand at 97.433 kb on - strand at 97.433 kb on - strand at 97.433 kb on - strand at 97.433 kb on - strand at 97.436 kb on + strand at 97.436 kb on + strand at 97.436 kb on + strand at 97.436 kb on + strand at 97.436 kb on + strand at 97.436 kb on + strand at 97.437 kb on - strand at 97.437 kb on - strand at 97.437 kb on - strand at 97.437 kb on - strand at 97.437 kb on - strand at 97.440 kb on + strand at 97.441 kb on - strand at 97.441 kb on - strand at 97.442 kb on + strand at 97.442 kb on + strand at 97.443 kb on - strand at 97.443 kb on - strand at 97.443 kb on - strand at 97.443 kb on - strand at 97.443 kb on - strand at 97.450 kb on + strand at 97.450 kb on + strand at 97.450 kb on + strand at 97.451 kb on - strand at 97.451 kb on - strand at 97.451 kb on - strand at 97.451 kb on - strand at 97.451 kb on - strand at 97.451 kb on - strand at 97.451 kb on - strand at 97.453 kb on - strand at 97.453 kb on - strand at 97.477 kb on - strand at 97.477 kb on - strand at 97.477 kb on - strand at 97.507 kb on - strand at 97.507 kb on - strand at 97.507 kb on - strand at 97.520 kb on + strand at 97.520 kb on + strand at 97.521 kb on - strand at 97.555 kb on - strand at 97.555 kb on - strand at 97.555 kb on - strand at 97.555 kb on - strand at 97.555 kb on - strand at 97.569 kb on + strand at 97.645 kb on + strand at 97.646 kb on - strand at 97.681 kb on - strand, within EX31_RS09440 at 97.774 kb on - strand, within EX31_RS09440 at 97.790 kb on - strand, within EX31_RS09440 at 97.790 kb on - strand, within EX31_RS09440 at 97.817 kb on + strand, within EX31_RS09440 at 97.818 kb on - strand, within EX31_RS09440 at 97.818 kb on - strand, within EX31_RS09440 at 97.889 kb on + strand, within EX31_RS09440 at 97.890 kb on - strand, within EX31_RS09440 at 98.085 kb on + strand, within EX31_RS09440 at 98.218 kb on - strand, within EX31_RS09440 at 98.218 kb on - strand, within EX31_RS09440 at 98.303 kb on + strand, within EX31_RS09440 at 98.303 kb on + strand, within EX31_RS09440 at 98.304 kb on - strand, within EX31_RS09440
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 95,648 - EX31_RS09425 0.69 -1.2 95,734 + EX31_RS09425 0.80 +0.1 95,735 - EX31_RS09425 0.80 +1.1 95,810 + +0.2 95,875 + +0.5 95,875 + +0.4 95,960 + EX31_RS09430 0.12 -1.3 95,960 + EX31_RS09430 0.12 +0.2 95,960 + EX31_RS09430 0.12 +0.2 95,960 + EX31_RS09430 0.12 -0.3 95,981 + EX31_RS09430 0.15 -0.3 95,982 - EX31_RS09430 0.16 +0.7 95,982 - EX31_RS09430 0.16 -1.9 95,982 - EX31_RS09430 0.16 -0.3 96,168 + EX31_RS09430 0.43 +1.2 96,243 - EX31_RS09430 0.55 +1.0 96,243 - EX31_RS09430 0.55 +1.2 96,320 + EX31_RS09430 0.66 -1.9 96,323 + EX31_RS09430 0.67 -1.7 96,323 + EX31_RS09430 0.67 +0.1 96,323 + EX31_RS09430 0.67 -1.7 96,324 - EX31_RS09430 0.67 -1.3 96,375 - EX31_RS09430 0.74 +1.2 96,445 - EX31_RS09430 0.85 +0.7 96,535 - +1.2 96,575 - -0.9 96,618 + -0.3 96,618 + +0.7 96,619 - +0.3 96,619 - -0.4 96,619 - +1.1 96,619 - +0.7 96,703 + EX31_RS09435 0.11 +2.7 96,704 - EX31_RS09435 0.11 +1.1 96,787 + EX31_RS09435 0.21 -1.3 96,788 - EX31_RS09435 0.21 -1.2 96,788 - EX31_RS09435 0.21 -0.2 96,875 - EX31_RS09435 0.32 +0.2 96,891 + EX31_RS09435 0.34 -0.9 96,892 - EX31_RS09435 0.34 -0.3 96,892 - EX31_RS09435 0.34 +1.3 96,892 - EX31_RS09435 0.34 -1.3 96,892 - EX31_RS09435 0.34 -0.2 96,892 - EX31_RS09435 0.34 +2.0 96,892 - EX31_RS09435 0.34 +1.5 96,892 - EX31_RS09435 0.34 -1.1 96,892 - EX31_RS09435 0.34 +0.1 96,892 - EX31_RS09435 0.34 -0.3 96,892 - EX31_RS09435 0.34 +0.7 96,895 + EX31_RS09435 0.35 +0.7 96,896 - EX31_RS09435 0.35 +0.2 96,896 - EX31_RS09435 0.35 +0.2 96,940 - EX31_RS09435 0.40 +1.1 96,940 - EX31_RS09435 0.40 +0.7 96,957 - EX31_RS09435 0.42 -0.3 96,957 - EX31_RS09435 0.42 -0.2 97,019 - EX31_RS09435 0.50 +0.7 97,048 - EX31_RS09435 0.54 +0.7 97,048 - EX31_RS09435 0.54 +2.4 97,048 - EX31_RS09435 0.54 -0.6 97,066 - EX31_RS09435 0.56 +2.2 97,066 - EX31_RS09435 0.56 +0.7 97,118 - EX31_RS09435 0.63 -1.9 97,118 - EX31_RS09435 0.63 +0.2 97,118 - EX31_RS09435 0.63 -0.1 97,266 + EX31_RS09435 0.81 +3.0 97,266 + EX31_RS09435 0.81 +1.7 97,267 - EX31_RS09435 0.81 +1.4 97,320 - EX31_RS09435 0.88 +2.0 97,339 + -1.3 97,340 - -0.3 97,340 - +1.4 97,405 + -0.3 97,431 - +0.1 97,431 - -0.6 97,431 - -0.3 97,432 + +2.7 97,433 - -0.3 97,433 - +0.1 97,433 - +1.1 97,433 - +1.1 97,433 - -2.3 97,433 - +1.3 97,433 - -1.2 97,433 - +0.7 97,433 - +1.4 97,436 + -0.3 97,436 + +0.7 97,436 + +0.7 97,436 + +0.3 97,436 + +1.7 97,436 + +1.9 97,437 - -2.2 97,437 - +0.1 97,437 - +1.2 97,437 - +0.1 97,437 - -1.7 97,440 + +0.1 97,441 - -1.9 97,441 - -1.9 97,442 + -0.1 97,442 + -1.3 97,443 - -0.7 97,443 - +0.8 97,443 - +1.5 97,443 - -0.3 97,443 - +1.2 97,450 + -1.7 97,450 + +2.0 97,450 + -1.3 97,451 - +2.7 97,451 - +0.3 97,451 - +0.2 97,451 - -0.3 97,451 - +1.2 97,451 - -0.6 97,451 - +3.2 97,453 - +0.7 97,453 - +1.1 97,477 - +2.1 97,477 - +0.7 97,477 - +1.4 97,507 - +0.9 97,507 - -0.6 97,507 - +2.2 97,520 + +0.7 97,520 + -2.2 97,521 - -0.6 97,555 - -1.8 97,555 - -1.3 97,555 - +1.5 97,555 - +0.7 97,555 - +1.0 97,569 + +0.7 97,645 + -2.7 97,646 - +1.7 97,681 - EX31_RS09440 0.13 +1.4 97,774 - EX31_RS09440 0.22 +0.2 97,790 - EX31_RS09440 0.23 +0.1 97,790 - EX31_RS09440 0.23 +1.7 97,817 + EX31_RS09440 0.26 +0.1 97,818 - EX31_RS09440 0.26 -1.1 97,818 - EX31_RS09440 0.26 +0.9 97,889 + EX31_RS09440 0.33 +0.3 97,890 - EX31_RS09440 0.33 -1.5 98,085 + EX31_RS09440 0.53 +0.2 98,218 - EX31_RS09440 0.66 -1.8 98,218 - EX31_RS09440 0.66 +0.5 98,303 + EX31_RS09440 0.74 +2.4 98,303 + EX31_RS09440 0.74 -0.7 98,304 - EX31_RS09440 0.74 -2.2
Or see this region's nucleotide sequence