Strain Fitness in Rahnella sp. WP5 around EX31_RS09415

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09410 and EX31_RS09415 are separated by 247 nucleotidesEX31_RS09415 and EX31_RS09420 are separated by 510 nucleotides EX31_RS09410: EX31_RS09410 - iron permease, at 87,546 to 88,397 _RS09410 EX31_RS09415: EX31_RS09415 - sodium/proline symporter PutP, at 88,645 to 90,129 _RS09415 EX31_RS09420: EX31_RS09420 - trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase, at 90,640 to 94,614 _RS09420 Position (kb) 88 89 90 91Strain fitness (log2 ratio) -2 -1 0 1 2 3at 88.109 kb on + strand, within EX31_RS09410at 88.110 kb on - strand, within EX31_RS09410at 88.144 kb on + strand, within EX31_RS09410at 88.144 kb on + strand, within EX31_RS09410at 88.144 kb on + strand, within EX31_RS09410at 88.144 kb on + strand, within EX31_RS09410at 88.145 kb on - strand, within EX31_RS09410at 88.145 kb on - strand, within EX31_RS09410at 88.145 kb on - strand, within EX31_RS09410at 88.145 kb on - strand, within EX31_RS09410at 88.145 kb on - strand, within EX31_RS09410at 88.145 kb on - strand, within EX31_RS09410at 88.145 kb on - strand, within EX31_RS09410at 88.145 kb on - strand, within EX31_RS09410at 88.145 kb on - strand, within EX31_RS09410at 88.145 kb on - strand, within EX31_RS09410at 88.145 kb on - strand, within EX31_RS09410at 88.145 kb on - strand, within EX31_RS09410at 88.145 kb on - strand, within EX31_RS09410at 88.178 kb on + strand, within EX31_RS09410at 88.179 kb on - strand, within EX31_RS09410at 88.325 kb on - strandat 88.376 kb on + strandat 88.377 kb on - strandat 88.441 kb on + strandat 88.441 kb on + strandat 88.442 kb on - strandat 88.503 kb on + strandat 88.504 kb on - strandat 88.504 kb on - strandat 88.504 kb on - strandat 88.546 kb on + strandat 88.546 kb on + strandat 88.546 kb on + strandat 88.547 kb on - strandat 88.547 kb on - strandat 88.547 kb on - strandat 88.574 kb on + strandat 88.630 kb on - strandat 88.630 kb on - strandat 88.650 kb on + strandat 88.650 kb on + strandat 88.650 kb on + strandat 88.650 kb on + strandat 88.651 kb on - strandat 88.651 kb on - strandat 88.654 kb on - strandat 88.654 kb on - strandat 88.656 kb on + strandat 88.656 kb on + strandat 88.656 kb on + strandat 88.657 kb on - strandat 88.708 kb on - strandat 88.773 kb on - strandat 88.848 kb on + strand, within EX31_RS09415at 88.857 kb on + strand, within EX31_RS09415at 88.922 kb on + strand, within EX31_RS09415at 88.922 kb on + strand, within EX31_RS09415at 88.922 kb on + strand, within EX31_RS09415at 88.923 kb on - strand, within EX31_RS09415at 88.923 kb on - strand, within EX31_RS09415at 89.058 kb on - strand, within EX31_RS09415at 89.058 kb on - strand, within EX31_RS09415at 89.247 kb on - strand, within EX31_RS09415at 89.247 kb on - strand, within EX31_RS09415at 89.247 kb on - strand, within EX31_RS09415at 89.331 kb on + strand, within EX31_RS09415at 89.387 kb on + strand, within EX31_RS09415at 89.453 kb on + strand, within EX31_RS09415at 89.454 kb on - strand, within EX31_RS09415at 89.454 kb on - strand, within EX31_RS09415at 89.477 kb on - strand, within EX31_RS09415at 89.491 kb on - strand, within EX31_RS09415at 89.569 kb on - strand, within EX31_RS09415at 89.608 kb on - strand, within EX31_RS09415at 89.608 kb on - strand, within EX31_RS09415at 89.608 kb on - strand, within EX31_RS09415at 89.609 kb on + strand, within EX31_RS09415at 89.609 kb on + strand, within EX31_RS09415at 89.609 kb on + strand, within EX31_RS09415at 89.610 kb on - strand, within EX31_RS09415at 89.610 kb on - strand, within EX31_RS09415at 89.610 kb on - strand, within EX31_RS09415at 89.652 kb on - strand, within EX31_RS09415at 89.711 kb on + strand, within EX31_RS09415at 89.712 kb on - strand, within EX31_RS09415at 89.712 kb on - strand, within EX31_RS09415at 89.788 kb on - strand, within EX31_RS09415at 89.814 kb on + strand, within EX31_RS09415at 89.814 kb on + strand, within EX31_RS09415at 89.815 kb on - strand, within EX31_RS09415at 89.871 kb on - strand, within EX31_RS09415at 89.923 kb on - strand, within EX31_RS09415at 89.923 kb on - strand, within EX31_RS09415at 90.024 kb on + strandat 90.025 kb on - strandat 90.027 kb on - strandat 90.027 kb on - strandat 90.027 kb on - strandat 90.049 kb on + strandat 90.050 kb on - strandat 90.050 kb on - strandat 90.050 kb on - strandat 90.050 kb on - strandat 90.050 kb on - strandat 90.090 kb on - strandat 90.147 kb on - strandat 90.419 kb on - strandat 90.538 kb on - strandat 90.583 kb on - strandat 90.594 kb on + strandat 90.624 kb on + strandat 90.624 kb on + strandat 90.783 kb on + strandat 90.879 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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88,109 + EX31_RS09410 0.66 -1.3
88,110 - EX31_RS09410 0.66 -1.3
88,144 + EX31_RS09410 0.70 +0.3
88,144 + EX31_RS09410 0.70 -0.1
88,144 + EX31_RS09410 0.70 +0.3
88,144 + EX31_RS09410 0.70 +1.2
88,145 - EX31_RS09410 0.70 -0.9
88,145 - EX31_RS09410 0.70 -0.3
88,145 - EX31_RS09410 0.70 -0.8
88,145 - EX31_RS09410 0.70 +0.7
88,145 - EX31_RS09410 0.70 +1.0
88,145 - EX31_RS09410 0.70 +0.7
88,145 - EX31_RS09410 0.70 +0.0
88,145 - EX31_RS09410 0.70 +1.0
88,145 - EX31_RS09410 0.70 +0.1
88,145 - EX31_RS09410 0.70 +0.7
88,145 - EX31_RS09410 0.70 -0.7
88,145 - EX31_RS09410 0.70 +1.2
88,145 - EX31_RS09410 0.70 +1.3
88,178 + EX31_RS09410 0.74 -1.1
88,179 - EX31_RS09410 0.74 +0.4
88,325 - -0.3
88,376 + +0.2
88,377 - -0.9
88,441 + +1.5
88,441 + -0.9
88,442 - -1.3
88,503 + -1.3
88,504 - +1.5
88,504 - -0.2
88,504 - -0.0
88,546 + -1.3
88,546 + -1.3
88,546 + +1.8
88,547 - +2.2
88,547 - +0.2
88,547 - +1.0
88,574 + +1.4
88,630 - -0.7
88,630 - +1.7
88,650 + +3.2
88,650 + +0.5
88,650 + -0.9
88,650 + +0.5
88,651 - -1.0
88,651 - -1.3
88,654 - -1.9
88,654 - +0.7
88,656 + -1.3
88,656 + +1.7
88,656 + +0.8
88,657 - -0.3
88,708 - -1.7
88,773 - +1.3
88,848 + EX31_RS09415 0.14 -0.3
88,857 + EX31_RS09415 0.14 +0.7
88,922 + EX31_RS09415 0.19 +1.3
88,922 + EX31_RS09415 0.19 -1.3
88,922 + EX31_RS09415 0.19 -1.7
88,923 - EX31_RS09415 0.19 -0.6
88,923 - EX31_RS09415 0.19 -0.3
89,058 - EX31_RS09415 0.28 +0.9
89,058 - EX31_RS09415 0.28 +2.2
89,247 - EX31_RS09415 0.41 +1.0
89,247 - EX31_RS09415 0.41 +0.8
89,247 - EX31_RS09415 0.41 -0.9
89,331 + EX31_RS09415 0.46 -0.1
89,387 + EX31_RS09415 0.50 -0.6
89,453 + EX31_RS09415 0.54 +0.7
89,454 - EX31_RS09415 0.54 -0.2
89,454 - EX31_RS09415 0.54 +0.7
89,477 - EX31_RS09415 0.56 -0.8
89,491 - EX31_RS09415 0.57 -1.7
89,569 - EX31_RS09415 0.62 +0.1
89,608 - EX31_RS09415 0.65 -0.3
89,608 - EX31_RS09415 0.65 -0.9
89,608 - EX31_RS09415 0.65 -1.2
89,609 + EX31_RS09415 0.65 +0.1
89,609 + EX31_RS09415 0.65 -1.2
89,609 + EX31_RS09415 0.65 -1.7
89,610 - EX31_RS09415 0.65 +0.7
89,610 - EX31_RS09415 0.65 -1.9
89,610 - EX31_RS09415 0.65 +2.0
89,652 - EX31_RS09415 0.68 -1.2
89,711 + EX31_RS09415 0.72 -0.2
89,712 - EX31_RS09415 0.72 -0.6
89,712 - EX31_RS09415 0.72 -0.7
89,788 - EX31_RS09415 0.77 +1.7
89,814 + EX31_RS09415 0.79 +0.7
89,814 + EX31_RS09415 0.79 -0.3
89,815 - EX31_RS09415 0.79 -0.9
89,871 - EX31_RS09415 0.83 +0.2
89,923 - EX31_RS09415 0.86 -0.9
89,923 - EX31_RS09415 0.86 +1.2
90,024 + -0.9
90,025 - -1.3
90,027 - -0.3
90,027 - +1.3
90,027 - +0.1
90,049 + +2.0
90,050 - +0.7
90,050 - +1.0
90,050 - +0.3
90,050 - +0.7
90,050 - -0.5
90,090 - +2.7
90,147 - +0.8
90,419 - -0.9
90,538 - +0.2
90,583 - +1.0
90,594 + -0.6
90,624 + -1.0
90,624 + +1.5
90,783 + -0.8
90,879 - -0.3

Or see this region's nucleotide sequence