Strain Fitness in Rahnella sp. WP5 around EX31_RS06330

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06315 and EX31_RS06320 overlap by 8 nucleotidesEX31_RS06320 and EX31_RS06325 are separated by 74 nucleotidesEX31_RS06325 and EX31_RS06330 overlap by 1 nucleotidesEX31_RS06330 and EX31_RS06335 are separated by 255 nucleotides EX31_RS06315: EX31_RS06315 - DNA topoisomerase III, at 25,575 to 27,527 _RS06315 EX31_RS06320: EX31_RS06320 - YnjH family protein, at 27,520 to 27,834 _RS06320 EX31_RS06325: EX31_RS06325 - pyrimidine (deoxy)nucleoside triphosphate diphosphatase, at 27,909 to 28,310 _RS06325 EX31_RS06330: EX31_RS06330 - exodeoxyribonuclease III, at 28,310 to 29,119 _RS06330 EX31_RS06335: EX31_RS06335 - transcriptional regulator TyrR, at 29,375 to 30,949 _RS06335 Position (kb) 28 29 30Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 27.477 kb on - strandat 27.495 kb on - strandat 27.621 kb on + strand, within EX31_RS06320at 27.678 kb on + strand, within EX31_RS06320at 27.678 kb on + strand, within EX31_RS06320at 27.708 kb on + strand, within EX31_RS06320at 27.708 kb on + strand, within EX31_RS06320at 27.708 kb on + strand, within EX31_RS06320at 27.709 kb on - strand, within EX31_RS06320at 27.709 kb on - strand, within EX31_RS06320at 27.712 kb on + strand, within EX31_RS06320at 27.712 kb on + strand, within EX31_RS06320at 27.712 kb on + strand, within EX31_RS06320at 27.712 kb on + strand, within EX31_RS06320at 27.712 kb on + strand, within EX31_RS06320at 27.727 kb on + strand, within EX31_RS06320at 27.843 kb on + strandat 27.895 kb on - strandat 27.895 kb on - strandat 27.899 kb on - strandat 28.026 kb on - strand, within EX31_RS06325at 28.072 kb on - strand, within EX31_RS06325at 28.091 kb on + strand, within EX31_RS06325at 28.092 kb on - strand, within EX31_RS06325at 28.158 kb on + strand, within EX31_RS06325at 28.158 kb on + strand, within EX31_RS06325at 28.159 kb on - strand, within EX31_RS06325at 28.159 kb on - strand, within EX31_RS06325at 28.254 kb on + strand, within EX31_RS06325at 28.255 kb on - strand, within EX31_RS06325at 28.311 kb on + strandat 28.311 kb on + strandat 28.312 kb on - strandat 28.312 kb on - strandat 28.312 kb on - strandat 28.312 kb on - strandat 28.378 kb on - strandat 28.378 kb on - strandat 28.378 kb on - strandat 28.439 kb on - strand, within EX31_RS06330at 28.496 kb on - strand, within EX31_RS06330at 28.661 kb on - strand, within EX31_RS06330at 28.661 kb on - strand, within EX31_RS06330at 28.795 kb on - strand, within EX31_RS06330at 28.954 kb on - strand, within EX31_RS06330at 28.954 kb on - strand, within EX31_RS06330at 28.999 kb on + strand, within EX31_RS06330at 29.000 kb on - strand, within EX31_RS06330at 29.000 kb on - strand, within EX31_RS06330at 29.000 kb on - strand, within EX31_RS06330at 29.000 kb on - strand, within EX31_RS06330at 29.025 kb on - strand, within EX31_RS06330at 29.327 kb on + strandat 29.327 kb on + strandat 29.328 kb on - strandat 29.328 kb on - strandat 29.330 kb on + strandat 29.330 kb on + strandat 29.331 kb on - strandat 29.450 kb on - strandat 29.457 kb on + strandat 29.492 kb on + strandat 29.492 kb on + strandat 29.492 kb on + strandat 29.492 kb on + strandat 29.493 kb on - strandat 29.521 kb on + strandat 29.665 kb on + strand, within EX31_RS06335at 29.821 kb on + strand, within EX31_RS06335at 29.821 kb on + strand, within EX31_RS06335at 29.821 kb on + strand, within EX31_RS06335at 29.821 kb on + strand, within EX31_RS06335at 29.821 kb on + strand, within EX31_RS06335at 29.822 kb on - strand, within EX31_RS06335at 29.822 kb on - strand, within EX31_RS06335at 29.865 kb on + strand, within EX31_RS06335at 29.865 kb on + strand, within EX31_RS06335at 29.865 kb on + strand, within EX31_RS06335at 29.865 kb on + strand, within EX31_RS06335at 29.865 kb on + strand, within EX31_RS06335at 29.865 kb on + strand, within EX31_RS06335at 29.865 kb on + strand, within EX31_RS06335at 29.865 kb on + strand, within EX31_RS06335at 29.865 kb on + strand, within EX31_RS06335at 29.865 kb on + strand, within EX31_RS06335at 29.865 kb on + strand, within EX31_RS06335at 29.865 kb on + strand, within EX31_RS06335at 29.865 kb on + strand, within EX31_RS06335at 29.865 kb on + strand, within EX31_RS06335at 29.865 kb on + strand, within EX31_RS06335at 29.865 kb on + strand, within EX31_RS06335at 29.865 kb on + strand, within EX31_RS06335at 29.865 kb on + strand, within EX31_RS06335at 29.965 kb on + strand, within EX31_RS06335at 30.099 kb on + strand, within EX31_RS06335

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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27,477 - +1.3
27,495 - -0.3
27,621 + EX31_RS06320 0.32 +1.7
27,678 + EX31_RS06320 0.50 +1.1
27,678 + EX31_RS06320 0.50 +1.4
27,708 + EX31_RS06320 0.60 -0.3
27,708 + EX31_RS06320 0.60 +1.4
27,708 + EX31_RS06320 0.60 -0.3
27,709 - EX31_RS06320 0.60 +1.0
27,709 - EX31_RS06320 0.60 +0.3
27,712 + EX31_RS06320 0.61 -2.1
27,712 + EX31_RS06320 0.61 +0.4
27,712 + EX31_RS06320 0.61 +2.5
27,712 + EX31_RS06320 0.61 -2.1
27,712 + EX31_RS06320 0.61 +0.8
27,727 + EX31_RS06320 0.66 +0.7
27,843 + +0.7
27,895 - -0.7
27,895 - +1.8
27,899 - -0.1
28,026 - EX31_RS06325 0.29 +2.7
28,072 - EX31_RS06325 0.41 +1.3
28,091 + EX31_RS06325 0.45 +1.5
28,092 - EX31_RS06325 0.46 -1.0
28,158 + EX31_RS06325 0.62 +0.7
28,158 + EX31_RS06325 0.62 -0.3
28,159 - EX31_RS06325 0.62 -0.5
28,159 - EX31_RS06325 0.62 +0.7
28,254 + EX31_RS06325 0.86 +2.9
28,255 - EX31_RS06325 0.86 +0.5
28,311 + +0.5
28,311 + +1.1
28,312 - +1.3
28,312 - -0.6
28,312 - +0.3
28,312 - +1.4
28,378 - +4.3
28,378 - -0.3
28,378 - +1.1
28,439 - EX31_RS06330 0.16 -0.6
28,496 - EX31_RS06330 0.23 +0.7
28,661 - EX31_RS06330 0.43 -2.1
28,661 - EX31_RS06330 0.43 -0.9
28,795 - EX31_RS06330 0.60 -1.1
28,954 - EX31_RS06330 0.80 -1.8
28,954 - EX31_RS06330 0.80 -2.3
28,999 + EX31_RS06330 0.85 +1.0
29,000 - EX31_RS06330 0.85 +1.5
29,000 - EX31_RS06330 0.85 -1.9
29,000 - EX31_RS06330 0.85 -1.3
29,000 - EX31_RS06330 0.85 -0.4
29,025 - EX31_RS06330 0.88 -1.6
29,327 + +0.5
29,327 + -1.9
29,328 - -1.3
29,328 - +1.9
29,330 + +0.3
29,330 + +1.7
29,331 - +1.3
29,450 - -0.9
29,457 + -1.6
29,492 + +1.0
29,492 + +1.0
29,492 + +1.3
29,492 + +0.1
29,493 - +0.1
29,521 + +1.1
29,665 + EX31_RS06335 0.18 +1.0
29,821 + EX31_RS06335 0.28 +0.5
29,821 + EX31_RS06335 0.28 +0.5
29,821 + EX31_RS06335 0.28 +0.1
29,821 + EX31_RS06335 0.28 -1.3
29,821 + EX31_RS06335 0.28 -0.3
29,822 - EX31_RS06335 0.28 -0.3
29,822 - EX31_RS06335 0.28 -1.6
29,865 + EX31_RS06335 0.31 -0.6
29,865 + EX31_RS06335 0.31 -2.5
29,865 + EX31_RS06335 0.31 +0.1
29,865 + EX31_RS06335 0.31 -1.8
29,865 + EX31_RS06335 0.31 -0.5
29,865 + EX31_RS06335 0.31 +0.8
29,865 + EX31_RS06335 0.31 -0.9
29,865 + EX31_RS06335 0.31 +0.2
29,865 + EX31_RS06335 0.31 +0.1
29,865 + EX31_RS06335 0.31 -0.1
29,865 + EX31_RS06335 0.31 -0.2
29,865 + EX31_RS06335 0.31 -1.6
29,865 + EX31_RS06335 0.31 +0.7
29,865 + EX31_RS06335 0.31 -0.7
29,865 + EX31_RS06335 0.31 -2.1
29,865 + EX31_RS06335 0.31 +0.8
29,865 + EX31_RS06335 0.31 -2.9
29,865 + EX31_RS06335 0.31 +1.7
29,965 + EX31_RS06335 0.37 +1.3
30,099 + EX31_RS06335 0.46 -0.9

Or see this region's nucleotide sequence