Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS22890 and CA265_RS22895 are separated by 50 nucleotides CA265_RS22895 and CA265_RS22900 are separated by 233 nucleotides CA265_RS22900 and CA265_RS22905 are separated by 339 nucleotides
CA265_RS22890: CA265_RS22890 - anthranilate synthase component I, at 5,607,236 to 5,608,636
_RS22890
CA265_RS22895: CA265_RS22895 - aminodeoxychorismate/anthranilate synthase component II, at 5,608,687 to 5,609,283
_RS22895
CA265_RS22900: CA265_RS22900 - indole-3-glycerol phosphate synthase, at 5,609,517 to 5,610,299
_RS22900
CA265_RS22905: CA265_RS22905 - GTPase HflX, at 5,610,639 to 5,611,829
_RS22905
Position (kb)
5609
5610
5611 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5608.645 kb on + strand at 5608.678 kb on - strand at 5608.683 kb on + strand at 5608.695 kb on + strand at 5608.906 kb on + strand, within CA265_RS22895 at 5608.907 kb on - strand, within CA265_RS22895 at 5608.940 kb on + strand, within CA265_RS22895 at 5608.983 kb on - strand, within CA265_RS22895 at 5609.073 kb on - strand, within CA265_RS22895 at 5609.087 kb on - strand, within CA265_RS22895 at 5609.152 kb on - strand, within CA265_RS22895 at 5609.163 kb on + strand, within CA265_RS22895 at 5609.187 kb on - strand, within CA265_RS22895 at 5609.202 kb on - strand, within CA265_RS22895 at 5609.272 kb on - strand at 5609.363 kb on + strand at 5609.364 kb on - strand at 5609.368 kb on - strand at 5609.368 kb on - strand at 5609.370 kb on - strand at 5609.407 kb on - strand at 5609.629 kb on - strand, within CA265_RS22900 at 5609.714 kb on + strand, within CA265_RS22900 at 5609.751 kb on + strand, within CA265_RS22900 at 5609.752 kb on - strand, within CA265_RS22900 at 5609.850 kb on - strand, within CA265_RS22900 at 5609.874 kb on - strand, within CA265_RS22900 at 5609.944 kb on + strand, within CA265_RS22900 at 5610.182 kb on + strand, within CA265_RS22900 at 5610.295 kb on + strand at 5610.296 kb on - strand at 5610.296 kb on - strand at 5610.316 kb on + strand at 5610.362 kb on - strand at 5610.385 kb on + strand at 5610.456 kb on + strand at 5610.508 kb on - strand at 5610.529 kb on + strand at 5610.636 kb on + strand at 5610.742 kb on + strand at 5610.742 kb on + strand at 5610.764 kb on - strand, within CA265_RS22905 at 5610.859 kb on + strand, within CA265_RS22905 at 5611.142 kb on - strand, within CA265_RS22905 at 5611.265 kb on - strand, within CA265_RS22905
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 5,608,645 + +0.5 5,608,678 - -1.1 5,608,683 + +0.7 5,608,695 + -0.7 5,608,906 + CA265_RS22895 0.37 +0.4 5,608,907 - CA265_RS22895 0.37 -1.9 5,608,940 + CA265_RS22895 0.42 -0.3 5,608,983 - CA265_RS22895 0.50 -0.5 5,609,073 - CA265_RS22895 0.65 -1.2 5,609,087 - CA265_RS22895 0.67 -0.5 5,609,152 - CA265_RS22895 0.78 -3.7 5,609,163 + CA265_RS22895 0.80 -0.7 5,609,187 - CA265_RS22895 0.84 -0.3 5,609,202 - CA265_RS22895 0.86 +0.2 5,609,272 - +0.4 5,609,363 + +1.4 5,609,364 - -1.2 5,609,368 - -2.1 5,609,368 - -3.5 5,609,370 - -2.7 5,609,407 - -1.6 5,609,629 - CA265_RS22900 0.14 +2.3 5,609,714 + CA265_RS22900 0.25 -1.2 5,609,751 + CA265_RS22900 0.30 -0.1 5,609,752 - CA265_RS22900 0.30 -0.1 5,609,850 - CA265_RS22900 0.43 +0.3 5,609,874 - CA265_RS22900 0.46 -0.7 5,609,944 + CA265_RS22900 0.55 -1.6 5,610,182 + CA265_RS22900 0.85 +0.7 5,610,295 + -0.4 5,610,296 - -2.7 5,610,296 - -3.0 5,610,316 + -0.5 5,610,362 - -0.3 5,610,385 + +1.0 5,610,456 + +0.4 5,610,508 - -0.9 5,610,529 + -1.8 5,610,636 + +0.9 5,610,742 + +0.7 5,610,742 + +0.2 5,610,764 - CA265_RS22905 0.10 -1.4 5,610,859 + CA265_RS22905 0.18 -0.1 5,611,142 - CA265_RS22905 0.42 +0.2 5,611,265 - CA265_RS22905 0.53 -2.8
Or see this region's nucleotide sequence