Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS22900

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS22890 and CA265_RS22895 are separated by 50 nucleotidesCA265_RS22895 and CA265_RS22900 are separated by 233 nucleotidesCA265_RS22900 and CA265_RS22905 are separated by 339 nucleotides CA265_RS22890: CA265_RS22890 - anthranilate synthase component I, at 5,607,236 to 5,608,636 _RS22890 CA265_RS22895: CA265_RS22895 - aminodeoxychorismate/anthranilate synthase component II, at 5,608,687 to 5,609,283 _RS22895 CA265_RS22900: CA265_RS22900 - indole-3-glycerol phosphate synthase, at 5,609,517 to 5,610,299 _RS22900 CA265_RS22905: CA265_RS22905 - GTPase HflX, at 5,610,639 to 5,611,829 _RS22905 Position (kb) 5609 5610 5611Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5608.645 kb on + strandat 5608.678 kb on - strandat 5608.683 kb on + strandat 5608.695 kb on + strandat 5608.906 kb on + strand, within CA265_RS22895at 5608.907 kb on - strand, within CA265_RS22895at 5608.940 kb on + strand, within CA265_RS22895at 5608.983 kb on - strand, within CA265_RS22895at 5609.073 kb on - strand, within CA265_RS22895at 5609.087 kb on - strand, within CA265_RS22895at 5609.152 kb on - strand, within CA265_RS22895at 5609.163 kb on + strand, within CA265_RS22895at 5609.187 kb on - strand, within CA265_RS22895at 5609.202 kb on - strand, within CA265_RS22895at 5609.272 kb on - strandat 5609.363 kb on + strandat 5609.364 kb on - strandat 5609.368 kb on - strandat 5609.368 kb on - strandat 5609.370 kb on - strandat 5609.407 kb on - strandat 5609.629 kb on - strand, within CA265_RS22900at 5609.714 kb on + strand, within CA265_RS22900at 5609.751 kb on + strand, within CA265_RS22900at 5609.752 kb on - strand, within CA265_RS22900at 5609.850 kb on - strand, within CA265_RS22900at 5609.874 kb on - strand, within CA265_RS22900at 5609.944 kb on + strand, within CA265_RS22900at 5610.182 kb on + strand, within CA265_RS22900at 5610.295 kb on + strandat 5610.296 kb on - strandat 5610.296 kb on - strandat 5610.316 kb on + strandat 5610.362 kb on - strandat 5610.385 kb on + strandat 5610.456 kb on + strandat 5610.508 kb on - strandat 5610.529 kb on + strandat 5610.636 kb on + strandat 5610.742 kb on + strandat 5610.742 kb on + strandat 5610.764 kb on - strand, within CA265_RS22905at 5610.859 kb on + strand, within CA265_RS22905at 5611.142 kb on - strand, within CA265_RS22905at 5611.265 kb on - strand, within CA265_RS22905

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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5,608,645 + +0.5
5,608,678 - -1.1
5,608,683 + +0.7
5,608,695 + -0.7
5,608,906 + CA265_RS22895 0.37 +0.4
5,608,907 - CA265_RS22895 0.37 -1.9
5,608,940 + CA265_RS22895 0.42 -0.3
5,608,983 - CA265_RS22895 0.50 -0.5
5,609,073 - CA265_RS22895 0.65 -1.2
5,609,087 - CA265_RS22895 0.67 -0.5
5,609,152 - CA265_RS22895 0.78 -3.7
5,609,163 + CA265_RS22895 0.80 -0.7
5,609,187 - CA265_RS22895 0.84 -0.3
5,609,202 - CA265_RS22895 0.86 +0.2
5,609,272 - +0.4
5,609,363 + +1.4
5,609,364 - -1.2
5,609,368 - -2.1
5,609,368 - -3.5
5,609,370 - -2.7
5,609,407 - -1.6
5,609,629 - CA265_RS22900 0.14 +2.3
5,609,714 + CA265_RS22900 0.25 -1.2
5,609,751 + CA265_RS22900 0.30 -0.1
5,609,752 - CA265_RS22900 0.30 -0.1
5,609,850 - CA265_RS22900 0.43 +0.3
5,609,874 - CA265_RS22900 0.46 -0.7
5,609,944 + CA265_RS22900 0.55 -1.6
5,610,182 + CA265_RS22900 0.85 +0.7
5,610,295 + -0.4
5,610,296 - -2.7
5,610,296 - -3.0
5,610,316 + -0.5
5,610,362 - -0.3
5,610,385 + +1.0
5,610,456 + +0.4
5,610,508 - -0.9
5,610,529 + -1.8
5,610,636 + +0.9
5,610,742 + +0.7
5,610,742 + +0.2
5,610,764 - CA265_RS22905 0.10 -1.4
5,610,859 + CA265_RS22905 0.18 -0.1
5,611,142 - CA265_RS22905 0.42 +0.2
5,611,265 - CA265_RS22905 0.53 -2.8

Or see this region's nucleotide sequence