Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS17495

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS17485 and CA265_RS17490 are separated by 30 nucleotidesCA265_RS17490 and CA265_RS17495 overlap by 1 nucleotidesCA265_RS17495 and CA265_RS17500 are separated by 119 nucleotidesCA265_RS17500 and CA265_RS17505 are separated by 32 nucleotides CA265_RS17485: CA265_RS17485 - isoleucine--tRNA ligase, at 4,358,676 to 4,362,077 _RS17485 CA265_RS17490: CA265_RS17490 - molecular chaperone DnaK, at 4,362,108 to 4,362,491 _RS17490 CA265_RS17495: CA265_RS17495 - lipoprotein signal peptidase, at 4,362,491 to 4,363,165 _RS17495 CA265_RS17500: CA265_RS17500 - hypothetical protein, at 4,363,285 to 4,364,130 _RS17500 CA265_RS17505: CA265_RS17505 - hypothetical protein, at 4,364,163 to 4,364,567 _RS17505 Position (kb) 4362 4363 4364Strain fitness (log2 ratio) -1 0 1at 4362.211 kb on + strand, within CA265_RS17490at 4362.490 kb on - strandat 4362.882 kb on - strand, within CA265_RS17495at 4363.111 kb on + strandat 4363.122 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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4,362,211 + CA265_RS17490 0.27 -1.5
4,362,490 - -0.9
4,362,882 - CA265_RS17495 0.58 +0.4
4,363,111 + +0.2
4,363,122 + -0.0

Or see this region's nucleotide sequence