Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04115

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS04105 and CA265_RS04110 are separated by 2 nucleotidesCA265_RS04110 and CA265_RS04115 are separated by 193 nucleotidesCA265_RS04115 and CA265_RS04120 are separated by 120 nucleotides CA265_RS04105: CA265_RS04105 - siroheme synthase, at 988,096 to 989,607 _RS04105 CA265_RS04110: CA265_RS04110 - phosphoadenosine phosphosulfate reductase, at 989,610 to 990,308 _RS04110 CA265_RS04115: CA265_RS04115 - sulfate adenylyltransferase, at 990,502 to 991,407 _RS04115 CA265_RS04120: CA265_RS04120 - sulfate adenylyltransferase, at 991,528 to 992,778 _RS04120 Position (kb) 990 991 992Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 989.565 kb on - strandat 989.655 kb on - strandat 989.685 kb on - strand, within CA265_RS04110at 989.766 kb on - strand, within CA265_RS04110at 989.775 kb on - strand, within CA265_RS04110at 989.818 kb on - strand, within CA265_RS04110at 989.840 kb on - strand, within CA265_RS04110at 989.840 kb on - strand, within CA265_RS04110at 989.848 kb on - strand, within CA265_RS04110at 989.863 kb on - strand, within CA265_RS04110at 989.863 kb on - strand, within CA265_RS04110at 989.962 kb on - strand, within CA265_RS04110at 989.962 kb on - strand, within CA265_RS04110at 989.996 kb on - strand, within CA265_RS04110at 990.057 kb on - strand, within CA265_RS04110at 990.108 kb on - strand, within CA265_RS04110at 990.125 kb on - strand, within CA265_RS04110at 990.166 kb on - strand, within CA265_RS04110at 990.198 kb on - strand, within CA265_RS04110at 990.306 kb on + strandat 990.307 kb on - strandat 990.307 kb on - strandat 990.307 kb on - strandat 990.433 kb on + strandat 990.434 kb on - strandat 990.461 kb on - strandat 990.507 kb on + strandat 990.507 kb on + strandat 990.513 kb on + strandat 990.514 kb on - strandat 990.693 kb on + strand, within CA265_RS04115at 990.721 kb on - strand, within CA265_RS04115at 990.725 kb on - strand, within CA265_RS04115at 990.789 kb on - strand, within CA265_RS04115at 990.877 kb on + strand, within CA265_RS04115at 990.877 kb on + strand, within CA265_RS04115at 991.013 kb on - strand, within CA265_RS04115at 991.090 kb on + strand, within CA265_RS04115at 991.190 kb on + strand, within CA265_RS04115at 991.190 kb on + strand, within CA265_RS04115at 991.194 kb on + strand, within CA265_RS04115at 991.252 kb on - strand, within CA265_RS04115at 991.303 kb on - strand, within CA265_RS04115at 991.303 kb on - strand, within CA265_RS04115at 991.495 kb on - strandat 991.536 kb on - strandat 991.572 kb on + strandat 991.606 kb on - strandat 991.606 kb on - strandat 991.676 kb on + strand, within CA265_RS04120at 991.739 kb on + strand, within CA265_RS04120at 991.776 kb on + strand, within CA265_RS04120at 991.776 kb on + strand, within CA265_RS04120at 991.789 kb on - strand, within CA265_RS04120at 991.808 kb on - strand, within CA265_RS04120at 991.809 kb on + strand, within CA265_RS04120at 991.810 kb on - strand, within CA265_RS04120at 991.906 kb on + strand, within CA265_RS04120at 991.907 kb on - strandat 991.962 kb on + strand, within CA265_RS04120at 991.972 kb on + strand, within CA265_RS04120at 991.987 kb on + strand, within CA265_RS04120at 992.051 kb on - strand, within CA265_RS04120at 992.113 kb on + strand, within CA265_RS04120at 992.114 kb on - strand, within CA265_RS04120at 992.141 kb on + strand, within CA265_RS04120at 992.170 kb on - strand, within CA265_RS04120at 992.170 kb on - strand, within CA265_RS04120at 992.196 kb on - strand, within CA265_RS04120at 992.229 kb on - strand, within CA265_RS04120at 992.258 kb on + strand, within CA265_RS04120at 992.259 kb on - strand, within CA265_RS04120at 992.298 kb on - strand, within CA265_RS04120at 992.385 kb on + strand, within CA265_RS04120at 992.385 kb on + strand, within CA265_RS04120

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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989,565 - -2.1
989,655 - -0.9
989,685 - CA265_RS04110 0.11 -1.8
989,766 - CA265_RS04110 0.22 -2.7
989,775 - CA265_RS04110 0.24 -4.7
989,818 - CA265_RS04110 0.30 -4.2
989,840 - CA265_RS04110 0.33 -4.5
989,840 - CA265_RS04110 0.33 -1.4
989,848 - CA265_RS04110 0.34 -4.4
989,863 - CA265_RS04110 0.36 -3.6
989,863 - CA265_RS04110 0.36 -4.6
989,962 - CA265_RS04110 0.50 -3.4
989,962 - CA265_RS04110 0.50 -1.5
989,996 - CA265_RS04110 0.55 -1.2
990,057 - CA265_RS04110 0.64 -1.5
990,108 - CA265_RS04110 0.71 -1.3
990,125 - CA265_RS04110 0.74 -3.1
990,166 - CA265_RS04110 0.80 -2.3
990,198 - CA265_RS04110 0.84 -4.3
990,306 + -0.2
990,307 - -2.1
990,307 - -1.5
990,307 - -2.8
990,433 + +0.6
990,434 - -3.1
990,461 - -2.9
990,507 + -1.4
990,507 + -2.4
990,513 + +0.4
990,514 - -3.4
990,693 + CA265_RS04115 0.21 -2.8
990,721 - CA265_RS04115 0.24 -0.8
990,725 - CA265_RS04115 0.25 -2.1
990,789 - CA265_RS04115 0.32 -0.2
990,877 + CA265_RS04115 0.41 -2.0
990,877 + CA265_RS04115 0.41 -1.8
991,013 - CA265_RS04115 0.56 -2.0
991,090 + CA265_RS04115 0.65 -2.4
991,190 + CA265_RS04115 0.76 -3.7
991,190 + CA265_RS04115 0.76 -3.1
991,194 + CA265_RS04115 0.76 -2.8
991,252 - CA265_RS04115 0.83 -2.0
991,303 - CA265_RS04115 0.88 -3.2
991,303 - CA265_RS04115 0.88 -3.0
991,495 - -1.6
991,536 - -0.5
991,572 + -3.8
991,606 - -3.6
991,606 - -2.0
991,676 + CA265_RS04120 0.12 -1.4
991,739 + CA265_RS04120 0.17 -2.8
991,776 + CA265_RS04120 0.20 -3.2
991,776 + CA265_RS04120 0.20 -3.7
991,789 - CA265_RS04120 0.21 -2.9
991,808 - CA265_RS04120 0.22 -1.8
991,809 + CA265_RS04120 0.22 -2.4
991,810 - CA265_RS04120 0.23 -3.2
991,906 + CA265_RS04120 0.30 -1.3
991,907 - +0.4
991,962 + CA265_RS04120 0.35 -1.4
991,972 + CA265_RS04120 0.35 -2.7
991,987 + CA265_RS04120 0.37 -1.9
992,051 - CA265_RS04120 0.42 -4.8
992,113 + CA265_RS04120 0.47 -2.4
992,114 - CA265_RS04120 0.47 -4.6
992,141 + CA265_RS04120 0.49 -3.3
992,170 - CA265_RS04120 0.51 -4.0
992,170 - CA265_RS04120 0.51 -4.5
992,196 - CA265_RS04120 0.53 -0.9
992,229 - CA265_RS04120 0.56 -3.1
992,258 + CA265_RS04120 0.58 -1.9
992,259 - CA265_RS04120 0.58 -3.5
992,298 - CA265_RS04120 0.62 -3.1
992,385 + CA265_RS04120 0.69 -3.3
992,385 + CA265_RS04120 0.69 -4.1

Or see this region's nucleotide sequence