Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35880

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS35875 and BPHYT_RS35880 are separated by 146 nucleotidesBPHYT_RS35880 and BPHYT_RS35885 are separated by 602 nucleotides BPHYT_RS35875: BPHYT_RS35875 - histidine kinase, at 10,534 to 10,998 _RS35875 BPHYT_RS35880: BPHYT_RS35880 - response regulator receiver protein, at 11,145 to 11,516 _RS35880 BPHYT_RS35885: BPHYT_RS35885 - hypothetical protein, at 12,119 to 12,403 _RS35885 Position (kb) 11 12Strain fitness (log2 ratio) -2 -1 0 1at 10.175 kb on + strandat 10.175 kb on + strandat 10.260 kb on - strandat 10.324 kb on - strandat 10.353 kb on - strandat 10.378 kb on - strandat 10.470 kb on + strandat 10.470 kb on + strandat 10.471 kb on - strandat 10.531 kb on + strandat 10.640 kb on + strand, within BPHYT_RS35875at 10.670 kb on + strand, within BPHYT_RS35875at 10.671 kb on - strand, within BPHYT_RS35875at 10.683 kb on + strand, within BPHYT_RS35875at 10.772 kb on + strand, within BPHYT_RS35875at 10.772 kb on + strand, within BPHYT_RS35875at 10.890 kb on + strand, within BPHYT_RS35875at 10.890 kb on + strand, within BPHYT_RS35875at 10.890 kb on + strand, within BPHYT_RS35875at 10.890 kb on + strand, within BPHYT_RS35875at 10.890 kb on + strand, within BPHYT_RS35875at 10.890 kb on + strand, within BPHYT_RS35875at 10.891 kb on - strand, within BPHYT_RS35875at 10.891 kb on - strand, within BPHYT_RS35875at 10.976 kb on + strandat 11.024 kb on + strandat 11.025 kb on - strandat 11.035 kb on - strandat 11.036 kb on + strandat 11.036 kb on + strandat 11.036 kb on + strandat 11.036 kb on + strandat 11.037 kb on - strandat 11.037 kb on - strandat 11.037 kb on - strandat 11.044 kb on + strandat 11.044 kb on + strandat 11.045 kb on - strandat 11.129 kb on + strandat 11.130 kb on - strandat 11.154 kb on - strandat 11.236 kb on + strand, within BPHYT_RS35880at 11.237 kb on - strand, within BPHYT_RS35880at 11.237 kb on - strand, within BPHYT_RS35880at 11.244 kb on + strand, within BPHYT_RS35880at 11.244 kb on + strand, within BPHYT_RS35880at 11.245 kb on - strand, within BPHYT_RS35880at 11.388 kb on - strand, within BPHYT_RS35880at 11.388 kb on - strand, within BPHYT_RS35880at 11.588 kb on + strandat 11.634 kb on + strandat 11.634 kb on + strandat 11.635 kb on - strandat 11.705 kb on - strandat 11.805 kb on - strandat 11.863 kb on - strandat 12.150 kb on - strand, within BPHYT_RS35885at 12.244 kb on + strand, within BPHYT_RS35885at 12.319 kb on - strand, within BPHYT_RS35885at 12.463 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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10,175 + +0.2
10,175 + +0.3
10,260 - -0.2
10,324 - -0.6
10,353 - +0.0
10,378 - +0.3
10,470 + +0.8
10,470 + +0.5
10,471 - +0.4
10,531 + -0.0
10,640 + BPHYT_RS35875 0.23 -1.4
10,670 + BPHYT_RS35875 0.29 -0.1
10,671 - BPHYT_RS35875 0.29 +0.4
10,683 + BPHYT_RS35875 0.32 -0.1
10,772 + BPHYT_RS35875 0.51 +0.9
10,772 + BPHYT_RS35875 0.51 +0.4
10,890 + BPHYT_RS35875 0.77 +0.4
10,890 + BPHYT_RS35875 0.77 -0.3
10,890 + BPHYT_RS35875 0.77 +0.4
10,890 + BPHYT_RS35875 0.77 -0.5
10,890 + BPHYT_RS35875 0.77 +0.0
10,890 + BPHYT_RS35875 0.77 +0.3
10,891 - BPHYT_RS35875 0.77 +0.3
10,891 - BPHYT_RS35875 0.77 +0.4
10,976 + +1.0
11,024 + -0.1
11,025 - +0.0
11,035 - -0.1
11,036 + -0.9
11,036 + +0.0
11,036 + +0.3
11,036 + +0.0
11,037 - -0.2
11,037 - +0.7
11,037 - -0.3
11,044 + -0.3
11,044 + -0.2
11,045 - +0.2
11,129 + +0.7
11,130 - -0.1
11,154 - +0.1
11,236 + BPHYT_RS35880 0.24 +0.1
11,237 - BPHYT_RS35880 0.25 -2.2
11,237 - BPHYT_RS35880 0.25 +1.5
11,244 + BPHYT_RS35880 0.27 +0.7
11,244 + BPHYT_RS35880 0.27 +0.6
11,245 - BPHYT_RS35880 0.27 +0.3
11,388 - BPHYT_RS35880 0.65 +0.8
11,388 - BPHYT_RS35880 0.65 +0.8
11,588 + +0.8
11,634 + -0.2
11,634 + +0.3
11,635 - -1.4
11,705 - +0.1
11,805 - +0.1
11,863 - +1.3
12,150 - BPHYT_RS35885 0.11 -2.7
12,244 + BPHYT_RS35885 0.44 -0.9
12,319 - BPHYT_RS35885 0.70 -0.6
12,463 + -1.2

Or see this region's nucleotide sequence