Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24040

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS24030 and BPHYT_RS24035 are separated by 55 nucleotidesBPHYT_RS24035 and BPHYT_RS24040 are separated by 19 nucleotidesBPHYT_RS24040 and BPHYT_RS24045 are separated by 21 nucleotidesBPHYT_RS24045 and BPHYT_RS24050 are separated by 88 nucleotides BPHYT_RS24030: BPHYT_RS24030 - histidine utilization repressor, at 956,336 to 957,139 _RS24030 BPHYT_RS24035: BPHYT_RS24035 - ATP-binding protein, at 957,195 to 958,064 _RS24035 BPHYT_RS24040: BPHYT_RS24040 - amino acid ABC transporter, at 958,084 to 958,746 _RS24040 BPHYT_RS24045: BPHYT_RS24045 - amino acid ABC transporter, at 958,768 to 959,418 _RS24045 BPHYT_RS24050: BPHYT_RS24050 - amino acid ABC transporter, at 959,507 to 960,334 _RS24050 Position (kb) 958 959Strain fitness (log2 ratio) -2 -1 0 1at 958.064 kb on + strandat 958.065 kb on - strandat 958.230 kb on + strand, within BPHYT_RS24040at 958.231 kb on - strand, within BPHYT_RS24040at 958.521 kb on - strand, within BPHYT_RS24040at 958.571 kb on + strand, within BPHYT_RS24040at 958.835 kb on + strand, within BPHYT_RS24045at 959.195 kb on + strand, within BPHYT_RS24045at 959.195 kb on + strand, within BPHYT_RS24045at 959.434 kb on + strandat 959.511 kb on + strandat 959.673 kb on + strand, within BPHYT_RS24050

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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958,064 + -0.2
958,065 - -0.0
958,230 + BPHYT_RS24040 0.22 +0.8
958,231 - BPHYT_RS24040 0.22 +0.7
958,521 - BPHYT_RS24040 0.66 +1.1
958,571 + BPHYT_RS24040 0.73 +0.9
958,835 + BPHYT_RS24045 0.10 -1.9
959,195 + BPHYT_RS24045 0.66 -1.6
959,195 + BPHYT_RS24045 0.66 +0.6
959,434 + +0.2
959,511 + -0.1
959,673 + BPHYT_RS24050 0.20 -1.4

Or see this region's nucleotide sequence