Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03610 and BPHYT_RS03615 overlap by 4 nucleotides BPHYT_RS03615 and BPHYT_RS03620 are separated by 48 nucleotides BPHYT_RS03620 and BPHYT_RS03625 overlap by 4 nucleotides BPHYT_RS03625 and BPHYT_RS03630 overlap by 8 nucleotides
BPHYT_RS03610: BPHYT_RS03610 - deoxyadenosine kinase, at 821,360 to 822,040
_RS03610
BPHYT_RS03615: BPHYT_RS03615 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase, at 822,037 to 822,585
_RS03615
BPHYT_RS03620: BPHYT_RS03620 - poly(A) polymerase, at 822,634 to 824,223
_RS03620
BPHYT_RS03625: BPHYT_RS03625 - Histidinol-phosphatase (EC:3.1.3.15) <small>(from data)</small>, at 824,220 to 824,906
_RS03625
BPHYT_RS03630: BPHYT_RS03630 - DnaA regulatory inactivator Hda, at 824,899 to 825,669
_RS03630
Position (kb) 822
823
824
825 Strain fitness (log2 ratio) -1
0
1
2 at 821.834 kb on - strand, within BPHYT_RS03610 at 822.089 kb on - strand at 822.089 kb on - strand at 822.631 kb on - strand at 822.631 kb on - strand at 822.631 kb on - strand at 822.818 kb on - strand, within BPHYT_RS03620 at 822.818 kb on - strand, within BPHYT_RS03620 at 822.818 kb on - strand, within BPHYT_RS03620 at 822.818 kb on - strand, within BPHYT_RS03620 at 822.890 kb on + strand, within BPHYT_RS03620 at 823.131 kb on + strand, within BPHYT_RS03620 at 823.132 kb on - strand, within BPHYT_RS03620 at 823.444 kb on + strand, within BPHYT_RS03620 at 823.444 kb on + strand, within BPHYT_RS03620 at 823.445 kb on - strand, within BPHYT_RS03620 at 823.542 kb on - strand, within BPHYT_RS03620 at 823.572 kb on - strand, within BPHYT_RS03620 at 823.572 kb on - strand, within BPHYT_RS03620 at 823.572 kb on - strand, within BPHYT_RS03620 at 823.574 kb on + strand, within BPHYT_RS03620 at 823.575 kb on - strand, within BPHYT_RS03620 at 823.575 kb on - strand, within BPHYT_RS03620 at 823.575 kb on - strand, within BPHYT_RS03620 at 823.575 kb on - strand, within BPHYT_RS03620 at 824.198 kb on - strand at 824.354 kb on - strand, within BPHYT_RS03625 at 824.359 kb on + strand, within BPHYT_RS03625 at 824.359 kb on + strand, within BPHYT_RS03625 at 824.467 kb on + strand, within BPHYT_RS03625 at 824.468 kb on - strand, within BPHYT_RS03625 at 824.637 kb on + strand, within BPHYT_RS03625 at 824.638 kb on - strand, within BPHYT_RS03625 at 824.665 kb on + strand, within BPHYT_RS03625 at 824.665 kb on + strand, within BPHYT_RS03625 at 824.665 kb on + strand, within BPHYT_RS03625 at 824.701 kb on + strand, within BPHYT_RS03625 at 824.701 kb on + strand, within BPHYT_RS03625 at 824.764 kb on + strand, within BPHYT_RS03625 at 824.764 kb on + strand, within BPHYT_RS03625 at 824.919 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 821,834 - BPHYT_RS03610 0.70 -0.1 822,089 - +0.0 822,089 - +0.1 822,631 - +0.5 822,631 - +1.6 822,631 - +0.8 822,818 - BPHYT_RS03620 0.12 +1.4 822,818 - BPHYT_RS03620 0.12 +0.9 822,818 - BPHYT_RS03620 0.12 +0.5 822,818 - BPHYT_RS03620 0.12 +0.2 822,890 + BPHYT_RS03620 0.16 +1.1 823,131 + BPHYT_RS03620 0.31 +0.2 823,132 - BPHYT_RS03620 0.31 +0.6 823,444 + BPHYT_RS03620 0.51 +1.6 823,444 + BPHYT_RS03620 0.51 +1.1 823,445 - BPHYT_RS03620 0.51 +1.0 823,542 - BPHYT_RS03620 0.57 +0.4 823,572 - BPHYT_RS03620 0.59 +0.1 823,572 - BPHYT_RS03620 0.59 -0.3 823,572 - BPHYT_RS03620 0.59 -0.0 823,574 + BPHYT_RS03620 0.59 +1.0 823,575 - BPHYT_RS03620 0.59 +0.0 823,575 - BPHYT_RS03620 0.59 -0.6 823,575 - BPHYT_RS03620 0.59 +0.5 823,575 - BPHYT_RS03620 0.59 +0.7 824,198 - +0.9 824,354 - BPHYT_RS03625 0.20 +0.7 824,359 + BPHYT_RS03625 0.20 +1.2 824,359 + BPHYT_RS03625 0.20 -0.3 824,467 + BPHYT_RS03625 0.36 +0.9 824,468 - BPHYT_RS03625 0.36 -0.3 824,637 + BPHYT_RS03625 0.61 +1.6 824,638 - BPHYT_RS03625 0.61 -0.1 824,665 + BPHYT_RS03625 0.65 +0.5 824,665 + BPHYT_RS03625 0.65 +1.5 824,665 + BPHYT_RS03625 0.65 +0.9 824,701 + BPHYT_RS03625 0.70 +0.7 824,701 + BPHYT_RS03625 0.70 -0.0 824,764 + BPHYT_RS03625 0.79 +2.2 824,764 + BPHYT_RS03625 0.79 -0.3 824,919 + +0.5
Or see this region's nucleotide sequence