Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19905

Experiment: CDM1 without Cytosine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Cytosine
2,263,417	+				+0.1
2,263,450	-				-0.4
2,263,452	+				+1.2
2,263,452	+				+0.8
2,263,455	-				+1.0
2,263,455	-				+0.2
2,263,455	-				-0.7
2,263,455	-				+0.3
2,263,455	-				-1.0
2,263,455	-				-2.4
2,263,460	-				+1.9
2,263,466	-				-0.4
2,263,468	+				-0.2
2,263,475	-				+0.0
2,263,480	-				-0.7
2,263,489	+				-1.0
2,263,528	-				+0.2
2,263,544	-				+0.2
2,263,551	+				+0.7
2,263,553	+				+0.4
2,263,561	-				-0.4
2,263,561	-				+1.0
2,263,563	+				+0.9
2,263,563	+				+0.4
2,263,578	+				+0.8
2,263,611	+				+0.8
2,263,614	+				-1.0
2,263,614	+				-0.0
2,263,619	+		BBR_RS19900	0.11	-0.8
2,263,619	+		BBR_RS19900	0.11	+1.3
2,263,627	+		BBR_RS19900	0.13	+0.4
2,263,668	+		BBR_RS19900	0.27	+0.4
2,263,686	+		BBR_RS19900	0.33	+0.4
2,263,686	+		BBR_RS19900	0.33	+0.9
2,263,691	+		BBR_RS19900	0.35	+0.8
2,263,694	-		BBR_RS19900	0.36	+0.7
2,263,694	-		BBR_RS19900	0.36	-1.0
2,263,694	-		BBR_RS19900	0.36	-1.4
2,263,694	-		BBR_RS19900	0.36	-0.4
2,263,694	-		BBR_RS19900	0.36	-0.2
2,263,694	-		BBR_RS19900	0.36	+0.7
2,263,694	-		BBR_RS19900	0.36	-0.3
2,263,709	-		BBR_RS19900	0.41	+1.0
2,263,722	-		BBR_RS19900	0.46	+1.3
2,263,725	+		BBR_RS19900	0.47	-0.1
2,263,741	+		BBR_RS19900	0.52	+0.1
2,263,742	-		BBR_RS19900	0.52	-1.6
2,263,742	-		BBR_RS19900	0.52	-0.7
2,263,770	-		BBR_RS19900	0.62	+0.7
2,263,823	+		BBR_RS19900	0.80	+1.4
2,263,828	+		BBR_RS19900	0.82	+0.5
2,263,828	+		BBR_RS19900	0.82	+1.9
2,263,828	+		BBR_RS19900	0.82	+0.5
2,263,831	-		BBR_RS19900	0.83	+0.6
2,263,836	-		BBR_RS19900	0.84	+1.0
2,263,836	-		BBR_RS19900	0.84	-0.4
2,263,836	-		BBR_RS19900	0.84	+0.1
2,263,882	-				+0.4
2,263,884	-				-0.5
2,263,911	-				-0.7
2,263,914	+				+0.3
2,263,919	+				+0.9
2,263,919	+				-0.5
2,263,919	-				+0.8
2,263,928	+				+0.2
2,263,951	+				-0.2
2,264,011	+				+0.1
2,264,036	+				-1.5
2,264,036	+				+0.8
2,264,036	+				-0.0
2,264,036	+				-0.1
2,264,044	+				+1.3
2,264,044	+				-0.7
2,264,044	-				-0.8
2,264,044	-				-0.3
2,264,044	-				-1.4
2,264,065	+				-0.6
2,264,065	+				-0.5
2,264,066	-				+0.8
2,264,066	-				-2.2
2,264,090	-				+0.5
2,264,101	-				-1.3
2,264,117	-				+0.3
2,264,208	+				+2.0
2,264,209	-				+0.5
2,264,243	-				-0.1
2,264,243	-				+0.6
2,264,251	+				+0.6
2,264,251	+				+0.3
2,264,252	+				+0.9
2,264,254	+				+0.2
2,264,256	+				+0.4
2,264,257	-				-0.1
2,264,262	-				-0.0
2,264,262	-				+1.3
2,264,264	-				+0.5
2,264,264	-				-0.1
2,264,267	+				+0.3
2,264,319	+				-0.2
2,264,320	+				-0.7
2,264,320	+				+1.1
2,264,327	+				+1.0
2,264,327	+				+0.5
2,264,330	-				+0.1
2,264,346	+				+0.9
2,264,346	+				+0.4
2,264,369	+				-0.5
2,264,369	+				+1.1
2,264,369	+				+0.9
2,264,374	+				-1.0
2,264,377	-				+0.3
2,264,377	-				-0.8
2,264,377	-				+0.4
2,264,382	-				+0.5
2,264,404	+				+0.3
2,264,411	-				+0.3
2,264,412	-				-0.7
2,264,412	-				+0.9
2,264,412	-				+0.4
2,264,412	-				+0.2
2,264,422	+				+1.7
2,264,463	-				-0.1
2,264,508	-				+1.8
2,264,508	-				+2.8
2,264,605	+		BBR_RS19905	0.11	-3.5
2,266,285	-				-0.1
2,266,291	+				-2.4
2,266,295	-				+0.8
2,266,298	+				-1.3
2,266,298	+				-3.5
2,266,298	+				-1.3
2,266,298	+				-2.3
2,266,306	-				-0.1
2,266,306	-				+0.3
2,266,306	-				-1.6
2,266,306	-				+0.6
2,266,306	-				+0.2
2,266,306	-				+0.5
2,266,308	-				+0.4
2,266,319	+				-3.6
2,266,338	-				-1.9
2,266,342	+				-1.9
2,266,342	+				-1.8
2,266,342	+				-2.3
2,266,363	-				+1.0
2,266,377	+				-0.6
2,266,378	-				-0.6
2,266,382	+				-1.7
2,266,396	-				+1.7
2,266,402	+				-1.2
2,266,402	+				-1.0
2,266,410	-				-0.0
2,266,410	-				+0.7
2,266,422	-				+0.7
2,266,422	-				-0.0
2,266,459	+				-2.4
2,266,469	+				-0.5
2,266,469	+				-0.4
2,266,469	+				-1.1
2,266,477	-				-1.4
2,266,477	-				+0.5
2,266,488	-				-0.4
2,266,522	-				+0.7
2,266,526	-				+0.2
2,266,543	+				+0.4
2,266,551	-				+0.9
2,266,561	-				+0.1
2,266,561	-				+0.2
2,266,571	-				-1.7
2,266,576	-				-0.1
2,266,576	-				-0.3
2,266,576	-				+0.3
2,266,582	+				+0.2
2,266,582	+				-0.0
2,266,585	+				-1.1
2,266,585	+				+0.7
2,266,590	-				+0.1
2,266,593	-				-0.9
2,266,594	+				-1.0
2,266,598	-		BBR_RS19910	0.10	-0.2
2,266,602	-		BBR_RS19910	0.11	+1.9
2,266,609	+		BBR_RS19910	0.12	-1.4
2,266,609	+		BBR_RS19910	0.12	+1.5
2,266,617	-		BBR_RS19910	0.13	+0.1
2,266,617	-		BBR_RS19910	0.13	-0.2
2,266,623	+		BBR_RS19910	0.14	-0.4
2,266,633	+		BBR_RS19910	0.16	-0.0
2,266,633	+		BBR_RS19910	0.16	-0.1
2,266,633	+		BBR_RS19910	0.16	-0.5
2,266,636	-		BBR_RS19910	0.16	-1.8
2,266,641	-		BBR_RS19910	0.17	+0.1
2,266,641	-		BBR_RS19910	0.17	-0.2
2,266,641	-		BBR_RS19910	0.17	+1.1
2,266,641	-		BBR_RS19910	0.17	-1.7
2,266,652	+		BBR_RS19910	0.19	-1.7
2,266,677	-		BBR_RS19910	0.23	+0.1
2,266,689	-		BBR_RS19910	0.25	+0.5
2,266,694	-		BBR_RS19910	0.25	+0.1
2,266,694	-		BBR_RS19910	0.25	-0.1
2,266,703	+		BBR_RS19910	0.27	+0.4
2,266,705	+		BBR_RS19910	0.27	-0.1
2,266,705	+		BBR_RS19910	0.27	+0.1
2,266,706	-		BBR_RS19910	0.27	+1.2
2,266,709	+		BBR_RS19910	0.28	-0.2
2,266,711	+		BBR_RS19910	0.28	+0.1
2,266,711	+		BBR_RS19910	0.28	-0.1
2,266,711	-		BBR_RS19910	0.28	-0.4
2,266,711	-		BBR_RS19910	0.28	+0.6
2,266,713	+		BBR_RS19910	0.28	+0.4
2,266,713	+		BBR_RS19910	0.28	-0.0
2,266,713	+		BBR_RS19910	0.28	+0.5
2,266,713	+		BBR_RS19910	0.28	+0.7
2,266,713	+		BBR_RS19910	0.28	-0.5
2,266,713	+		BBR_RS19910	0.28	+1.0
2,266,713	+		BBR_RS19910	0.28	-1.4
2,266,713	+		BBR_RS19910	0.28	-0.5
2,266,713	+		BBR_RS19910	0.28	+0.0
2,266,713	+		BBR_RS19910	0.28	-0.5
2,266,713	+		BBR_RS19910	0.28	-0.1
2,266,713	+		BBR_RS19910	0.28	-1.8
2,266,713	+		BBR_RS19910	0.28	+0.3
2,266,713	+		BBR_RS19910	0.28	-1.1
2,266,713	+		BBR_RS19910	0.28	+0.5
2,266,713	+		BBR_RS19910	0.28	+0.1
2,266,713	+		BBR_RS19910	0.28	+0.0
2,266,713	+		BBR_RS19910	0.28	+0.5
2,266,713	+		BBR_RS19910	0.28	-0.4
2,266,713	+		BBR_RS19910	0.28	+0.6
2,266,713	+		BBR_RS19910	0.28	+0.2
2,266,713	+		BBR_RS19910	0.28	+0.3
2,266,713	+		BBR_RS19910	0.28	+0.9
2,266,719	-		BBR_RS19910	0.29	+0.5
2,266,721	-		BBR_RS19910	0.30	+1.7
2,266,721	-		BBR_RS19910	0.30	+0.2
2,266,721	-		BBR_RS19910	0.30	+0.3
2,266,721	-		BBR_RS19910	0.30	-0.0
2,266,721	-		BBR_RS19910	0.30	-0.7
2,266,721	-		BBR_RS19910	0.30	+0.0
2,266,721	-		BBR_RS19910	0.30	-0.9
2,266,721	-		BBR_RS19910	0.30	+0.1
2,266,721	-		BBR_RS19910	0.30	+0.0
2,266,721	-		BBR_RS19910	0.30	+0.2
2,266,721	-		BBR_RS19910	0.30	+0.4
2,266,721	-		BBR_RS19910	0.30	+0.3
2,266,721	-		BBR_RS19910	0.30	-0.3
2,266,721	-		BBR_RS19910	0.30	-1.2
2,266,721	-		BBR_RS19910	0.30	-1.2
2,266,721	-		BBR_RS19910	0.30	+1.2
2,266,721	-		BBR_RS19910	0.30	-1.2
2,266,721	-		BBR_RS19910	0.30	+0.6
2,266,721	-		BBR_RS19910	0.30	+0.2
2,266,721	-		BBR_RS19910	0.30	+0.2
2,266,721	-		BBR_RS19910	0.30	-0.6
2,266,721	-		BBR_RS19910	0.30	+0.4
2,266,721	-		BBR_RS19910	0.30	-1.2
2,266,736	+		BBR_RS19910	0.32	-0.3
2,266,741	+		BBR_RS19910	0.33	+0.9
2,266,744	-		BBR_RS19910	0.33	-0.0
2,266,744	-		BBR_RS19910	0.33	+0.5
2,266,751	+		BBR_RS19910	0.34	+1.0
2,266,751	+		BBR_RS19910	0.34	-1.1
2,266,751	+		BBR_RS19910	0.34	-0.0
2,266,751	+		BBR_RS19910	0.34	+0.6
2,266,751	+		BBR_RS19910	0.34	-1.3
2,266,751	+		BBR_RS19910	0.34	+0.1
2,266,751	+		BBR_RS19910	0.34	-0.0
2,266,759	-		BBR_RS19910	0.36	-1.1
2,266,759	-		BBR_RS19910	0.36	-0.0
2,266,759	-		BBR_RS19910	0.36	+2.5
2,266,766	-		BBR_RS19910	0.37	-1.0
2,266,766	-		BBR_RS19910	0.37	-0.2
2,266,766	-		BBR_RS19910	0.37	-0.5
2,266,771	-		BBR_RS19910	0.38	+0.3
2,266,786	+		BBR_RS19910	0.40	+0.4
2,266,794	-		BBR_RS19910	0.41	-0.0
2,266,794	-		BBR_RS19910	0.41	+0.2
2,266,795	-		BBR_RS19910	0.41	-0.4
2,266,827	-		BBR_RS19910	0.46	+0.5
2,266,827	-		BBR_RS19910	0.46	-0.1
2,266,829	+		BBR_RS19910	0.47	-0.4
2,266,880	+		BBR_RS19910	0.55	-0.6
2,266,880	+		BBR_RS19910	0.55	-0.5
2,266,909	+		BBR_RS19910	0.59	-0.8
2,266,917	-		BBR_RS19910	0.61	-1.0
2,266,917	-		BBR_RS19910	0.61	-0.6
2,266,932	-		BBR_RS19910	0.63	+1.0
2,266,933	+		BBR_RS19910	0.63	+0.5
2,266,941	-		BBR_RS19910	0.64	+0.4
2,266,944	-		BBR_RS19910	0.65	+0.6
2,266,946	+		BBR_RS19910	0.65	+1.2
2,266,946	+		BBR_RS19910	0.65	-1.4
2,266,953	+		BBR_RS19910	0.66	-0.7
2,266,953	+		BBR_RS19910	0.66	-0.0
2,266,954	-		BBR_RS19910	0.67	+0.5
2,266,954	-		BBR_RS19910	0.67	+0.3
2,266,954	-		BBR_RS19910	0.67	+1.2
2,266,961	-		BBR_RS19910	0.68	-1.3
2,266,979	-		BBR_RS19910	0.70	+1.0
2,266,991	-		BBR_RS19910	0.72	-0.5
2,266,992	-		BBR_RS19910	0.73	+1.4
2,267,038	+		BBR_RS19910	0.80	+0.1
2,267,091	+		BBR_RS19910	0.88	-0.6
2,267,130	-				-1.4
2,267,135	+				-0.3
2,267,144	+				-1.2
2,267,146	+				-0.1
2,267,146	+				-0.3
2,267,153	-				-0.4
2,267,226	+		BBR_RS21135	0.20	-0.2
2,267,247	+		BBR_RS21135	0.26	-0.2
2,267,247	+		BBR_RS21135	0.26	-0.5
2,267,247	+		BBR_RS21135	0.26	+0.0
2,267,247	+		BBR_RS21135	0.26	-0.3
2,267,247	+		BBR_RS21135	0.26	+0.6
2,267,255	-		BBR_RS21135	0.28	+0.0
2,267,255	-		BBR_RS21135	0.28	-0.0
2,267,255	-		BBR_RS21135	0.28	+0.7
2,267,255	-		BBR_RS21135	0.28	-0.6
2,267,255	-		BBR_RS21135	0.28	+0.4