Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19735

Experiment: CDM1 without Cytosine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Cytosine
2,214,151	-				-0.3
2,214,167	-				-0.5
2,214,198	+				-2.3
2,214,206	-				-0.4
2,214,275	-				-0.9
2,214,282	+				-1.3
2,214,313	-				+0.7
2,214,336	+		BBR_RS19730	0.14	+0.2
2,214,341	+		BBR_RS19730	0.15	-0.6
2,214,348	+		BBR_RS19730	0.16	-1.5
2,214,348	+		BBR_RS19730	0.16	-1.0
2,214,348	+		BBR_RS19730	0.16	-0.5
2,214,348	+		BBR_RS19730	0.16	-0.8
2,214,348	+		BBR_RS19730	0.16	+0.1
2,214,349	-		BBR_RS19730	0.16	+0.4
2,214,349	-		BBR_RS19730	0.16	-0.9
2,214,349	-		BBR_RS19730	0.16	-2.3
2,214,349	-		BBR_RS19730	0.16	-0.9
2,214,356	-		BBR_RS19730	0.17	-0.0
2,214,356	-		BBR_RS19730	0.17	-0.4
2,214,356	-		BBR_RS19730	0.17	-1.2
2,214,358	+		BBR_RS19730	0.18	-2.7
2,214,358	+		BBR_RS19730	0.18	-1.7
2,214,361	-		BBR_RS19730	0.18	-1.2
2,214,366	-		BBR_RS19730	0.19	-3.1
2,214,371	-		BBR_RS19730	0.20	-0.4
2,214,372	+		BBR_RS19730	0.20	-3.2
2,214,380	+		BBR_RS19730	0.22	-1.1
2,214,401	+		BBR_RS19730	0.25	-1.5
2,214,406	+		BBR_RS19730	0.26	-1.9
2,214,408	+		BBR_RS19730	0.27	-0.9
2,214,408	+		BBR_RS19730	0.27	+0.0
2,214,416	-		BBR_RS19730	0.28	-0.2
2,214,416	-		BBR_RS19730	0.28	-0.8
2,214,416	-		BBR_RS19730	0.28	-0.7
2,214,416	-		BBR_RS19730	0.28	-0.5
2,214,426	-		BBR_RS19730	0.30	-0.3
2,214,430	+		BBR_RS19730	0.31	-0.5
2,214,462	+		BBR_RS19730	0.36	+0.2
2,214,467	+		BBR_RS19730	0.37	-0.9
2,214,467	+		BBR_RS19730	0.37	-1.4
2,214,468	-		BBR_RS19730	0.37	+1.1
2,214,523	-		BBR_RS19730	0.47	-0.7
2,214,549	-		BBR_RS19730	0.52	-1.1
2,214,549	-		BBR_RS19730	0.52	-0.7
2,214,551	+		BBR_RS19730	0.52	+0.5
2,214,568	+		BBR_RS19730	0.55	-2.5
2,214,622	+		BBR_RS19730	0.65	-1.6
2,214,648	+		BBR_RS19730	0.69	-2.8
2,214,650	+		BBR_RS19730	0.70	-0.4
2,214,660	-		BBR_RS19730	0.71	-2.0
2,214,695	+		BBR_RS19730	0.78	-2.0
2,214,695	+		BBR_RS19730	0.78	-3.3
2,214,695	+		BBR_RS19730	0.78	-0.7
2,214,695	+		BBR_RS19730	0.78	-0.1
2,214,695	+		BBR_RS19730	0.78	-1.1
2,214,698	+		BBR_RS19730	0.78	-1.3
2,214,701	-		BBR_RS19730	0.79	-3.4
2,214,703	-		BBR_RS19730	0.79	-1.1
2,214,703	-		BBR_RS19730	0.79	-2.8
2,214,703	-		BBR_RS19730	0.79	-0.9
2,214,705	+		BBR_RS19730	0.79	-0.1
2,214,706	-		BBR_RS19730	0.80	-1.9
2,214,706	-		BBR_RS19730	0.80	-0.8
2,214,728	+		BBR_RS19730	0.83	-0.7
2,214,728	+		BBR_RS19730	0.83	-3.5
2,214,734	-		BBR_RS19730	0.85	-2.3
2,214,734	-		BBR_RS19730	0.85	-2.7
2,214,736	-		BBR_RS19730	0.85	-0.8
2,214,736	-		BBR_RS19730	0.85	-1.5
2,214,743	+		BBR_RS19730	0.86	-0.9
2,214,746	-		BBR_RS19730	0.87	-1.0
2,214,772	-				-1.6
2,214,783	+				-2.9
2,214,784	+				-0.6
2,214,809	+				+0.2
2,214,819	+				-1.4
2,214,837	-				-1.9
2,214,864	-				-1.3
2,214,875	+				+0.5
2,214,875	+				-0.6
2,214,889	+				+1.4
2,214,889	-				-3.6
2,214,916	+				-0.5
2,214,916	+				-0.8
2,214,916	+				-0.6
2,214,916	+				-2.6
2,214,925	+				-1.8
2,215,998	+				-0.5
2,216,004	-				-0.2
2,216,010	-				-4.1
2,216,016	+				-1.8
2,216,023	+				+0.0
2,216,023	+				-2.1
2,216,047	-				-3.3
2,216,047	-				-1.1
2,216,080	-				-2.7
2,216,080	-				-0.4
2,216,080	-				-3.5
2,216,113	-				-2.1
2,216,115	+				-5.3
2,216,119	-				-2.5
2,216,123	-				-2.4
2,216,140	-				-4.1
2,216,140	-				-2.7
2,216,140	-				-5.5
2,216,181	+		BBR_RS19740	0.11	-3.4
2,216,191	+		BBR_RS19740	0.12	-4.8
2,216,211	+		BBR_RS19740	0.13	-4.3
2,216,211	+		BBR_RS19740	0.13	-4.9
2,216,214	-		BBR_RS19740	0.13	-4.8
2,216,259	+		BBR_RS19740	0.17	-2.5
2,216,259	+		BBR_RS19740	0.17	-1.2
2,216,267	-		BBR_RS19740	0.17	-3.5
2,216,271	+		BBR_RS19740	0.18	-4.4
2,216,275	+		BBR_RS19740	0.18	-3.3
2,216,275	-		BBR_RS19740	0.18	-3.6
2,216,279	-		BBR_RS19740	0.18	-1.8
2,216,285	+		BBR_RS19740	0.19	-4.1
2,216,285	+		BBR_RS19740	0.19	-3.7
2,216,291	-		BBR_RS19740	0.19	-5.3
2,216,291	-		BBR_RS19740	0.19	-1.9
2,216,291	-		BBR_RS19740	0.19	-2.4
2,216,294	+		BBR_RS19740	0.19	-2.9
2,216,294	-		BBR_RS19740	0.19	-5.0
2,216,299	-		BBR_RS19740	0.20	-4.4
2,216,301	-		BBR_RS19740	0.20	-1.3
2,216,303	+		BBR_RS19740	0.20	-2.8
2,216,303	+		BBR_RS19740	0.20	-4.6
2,216,303	+		BBR_RS19740	0.20	-4.1
2,216,303	+		BBR_RS19740	0.20	-4.5
2,216,308	-		BBR_RS19740	0.20	-3.0
2,216,311	-		BBR_RS19740	0.21	-2.5
2,216,321	+		BBR_RS19740	0.21	-4.1
2,216,321	+		BBR_RS19740	0.21	-4.0
2,216,321	+		BBR_RS19740	0.21	-4.1
2,216,329	-		BBR_RS19740	0.22	-2.9
2,216,329	-		BBR_RS19740	0.22	-3.8
2,216,329	-		BBR_RS19740	0.22	-1.7
2,216,329	-		BBR_RS19740	0.22	-4.4
2,216,329	-		BBR_RS19740	0.22	-4.7
2,216,329	-		BBR_RS19740	0.22	-2.7
2,216,339	-		BBR_RS19740	0.23	-0.6
2,216,345	-		BBR_RS19740	0.23	-4.2
2,216,350	-		BBR_RS19740	0.24	-2.6
2,216,350	-		BBR_RS19740	0.24	-1.3
2,216,356	+		BBR_RS19740	0.24	-1.9
2,216,360	-		BBR_RS19740	0.24	-1.8
2,216,360	-		BBR_RS19740	0.24	-3.8
2,216,409	+		BBR_RS19740	0.28	-1.1
2,216,422	-		BBR_RS19740	0.29	-2.4
2,216,422	-		BBR_RS19740	0.29	-4.1
2,216,433	-		BBR_RS19740	0.30	-4.0
2,216,435	+		BBR_RS19740	0.30	-3.7
2,216,435	+		BBR_RS19740	0.30	-2.9
2,216,435	+		BBR_RS19740	0.30	-3.1
2,216,435	+		BBR_RS19740	0.30	-0.8
2,216,440	+		BBR_RS19740	0.30	-5.2
2,216,443	-		BBR_RS19740	0.30	-3.3
2,216,445	+		BBR_RS19740	0.31	-4.4
2,216,445	+		BBR_RS19740	0.31	-5.9
2,216,445	+		BBR_RS19740	0.31	-4.6
2,216,448	-		BBR_RS19740	0.31	-4.3
2,216,448	-		BBR_RS19740	0.31	-1.5
2,216,453	-		BBR_RS19740	0.31	-5.1
2,216,453	-		BBR_RS19740	0.31	-4.3
2,216,476	-		BBR_RS19740	0.33	-4.3
2,216,476	-		BBR_RS19740	0.33	-5.2
2,216,489	+		BBR_RS19740	0.34	-3.3
2,216,489	+		BBR_RS19740	0.34	-4.2
2,216,489	+		BBR_RS19740	0.34	-4.2
2,216,495	-		BBR_RS19740	0.34	-2.8
2,216,497	-		BBR_RS19740	0.34	-3.9
2,216,497	-		BBR_RS19740	0.34	-2.3
2,216,497	-		BBR_RS19740	0.34	-3.3
2,216,497	-		BBR_RS19740	0.34	-3.1
2,216,497	-		BBR_RS19740	0.34	-4.1
2,216,497	-		BBR_RS19740	0.34	-2.2
2,216,512	-		BBR_RS19740	0.35	-3.1
2,216,513	+		BBR_RS19740	0.36	-3.9
2,216,513	+		BBR_RS19740	0.36	-4.7
2,216,521	-		BBR_RS19740	0.36	-3.8
2,216,523	-		BBR_RS19740	0.36	-2.6
2,216,525	+		BBR_RS19740	0.36	-4.2
2,216,530	+		BBR_RS19740	0.37	-4.0
2,216,530	-		BBR_RS19740	0.37	-2.2
2,216,533	-		BBR_RS19740	0.37	-4.0
2,216,581	-		BBR_RS19740	0.41	-4.3
2,216,585	-		BBR_RS19740	0.41	-4.0
2,216,593	+		BBR_RS19740	0.41	-2.5
2,216,626	-		BBR_RS19740	0.44	-1.0
2,216,626	-		BBR_RS19740	0.44	-4.7
2,216,626	-		BBR_RS19740	0.44	-4.2
2,216,626	-		BBR_RS19740	0.44	-3.1
2,216,628	+		BBR_RS19740	0.44	-4.9
2,216,631	-		BBR_RS19740	0.44	-4.2
2,216,644	+		BBR_RS19740	0.45	-2.0
2,216,650	+		BBR_RS19740	0.46	-2.8
2,216,672	+		BBR_RS19740	0.47	-3.0
2,216,672	+		BBR_RS19740	0.47	-5.2
2,216,672	+		BBR_RS19740	0.47	-3.2
2,216,672	+		BBR_RS19740	0.47	-3.8
2,216,680	-		BBR_RS19740	0.48	-2.9
2,216,680	-		BBR_RS19740	0.48	-3.8
2,216,686	+		BBR_RS19740	0.48	-3.5
2,216,724	+		BBR_RS19740	0.51	-3.3
2,216,724	+		BBR_RS19740	0.51	-4.8
2,216,724	+		BBR_RS19740	0.51	-4.0
2,216,724	+		BBR_RS19740	0.51	-4.2
2,216,724	+		BBR_RS19740	0.51	-3.3
2,216,732	-		BBR_RS19740	0.52	-1.0
2,216,732	-		BBR_RS19740	0.52	-4.6
2,216,742	-		BBR_RS19740	0.52	-3.8
2,216,750	+		BBR_RS19740	0.53	-4.8
2,216,760	-		BBR_RS19740	0.54	-5.2
2,216,760	-		BBR_RS19740	0.54	-3.0
2,216,764	+		BBR_RS19740	0.54	-3.1
2,216,786	-		BBR_RS19740	0.56	-3.3
2,216,795	+		BBR_RS19740	0.56	-3.0
2,216,831	+		BBR_RS19740	0.59	-3.6
2,216,833	+		BBR_RS19740	0.59	-3.9
2,216,839	+		BBR_RS19740	0.60	-1.4
2,216,849	-		BBR_RS19740	0.60	-1.2
2,216,858	+		BBR_RS19740	0.61	-3.4
2,216,867	-		BBR_RS19740	0.62	-4.3
2,216,873	+		BBR_RS19740	0.62	-4.4
2,216,880	-		BBR_RS19740	0.63	-3.9
2,216,913	-		BBR_RS19740	0.65	-2.0
2,216,929	-		BBR_RS19740	0.66	-2.3
2,216,929	-		BBR_RS19740	0.66	-2.9
2,216,948	+		BBR_RS19740	0.68	-3.0
2,216,992	-		BBR_RS19740	0.71	-3.0
2,216,992	-		BBR_RS19740	0.71	-2.1
2,216,999	+		BBR_RS19740	0.71	-4.0
2,217,000	-		BBR_RS19740	0.72	-5.4