Experiment: D-Trehalose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24475 and AO356_24480 are separated by 99 nucleotides AO356_24480 and AO356_24485 are separated by 65 nucleotides AO356_24485 and AO356_24490 are separated by 88 nucleotides AO356_24490 and AO356_24495 are separated by 235 nucleotides
AO356_24475: AO356_24475 - lytic transglycosylase, at 5,527,388 to 5,528,836
_24475
AO356_24480: AO356_24480 - hydroxyacylglutathione hydrolase, at 5,528,936 to 5,529,703
_24480
AO356_24485: AO356_24485 - SAM-dependent methyltransferase, at 5,529,769 to 5,530,527
_24485
AO356_24490: AO356_24490 - ribonuclease H, at 5,530,616 to 5,531,068
_24490
AO356_24495: AO356_24495 - DNA polymerase III subunit epsilon, at 5,531,304 to 5,532,065
_24495
Position (kb) 5529
5530
5531 Strain fitness (log2 ratio) -2
-1
0
1 at 5528.847 kb on + strand at 5528.847 kb on + strand at 5528.847 kb on + strand at 5528.848 kb on - strand at 5528.937 kb on + strand at 5528.937 kb on + strand at 5528.938 kb on - strand at 5528.944 kb on + strand at 5528.944 kb on + strand at 5528.945 kb on - strand at 5528.945 kb on - strand at 5529.198 kb on + strand, within AO356_24480 at 5529.198 kb on + strand, within AO356_24480 at 5529.198 kb on + strand, within AO356_24480 at 5529.198 kb on + strand, within AO356_24480 at 5529.198 kb on + strand, within AO356_24480 at 5529.199 kb on - strand, within AO356_24480 at 5529.199 kb on - strand, within AO356_24480 at 5529.213 kb on + strand, within AO356_24480 at 5529.214 kb on - strand, within AO356_24480 at 5529.223 kb on + strand, within AO356_24480 at 5529.223 kb on + strand, within AO356_24480 at 5529.224 kb on - strand, within AO356_24480 at 5529.345 kb on + strand, within AO356_24480 at 5529.346 kb on - strand, within AO356_24480 at 5529.346 kb on - strand, within AO356_24480 at 5529.348 kb on + strand, within AO356_24480 at 5529.367 kb on + strand, within AO356_24480 at 5529.367 kb on + strand, within AO356_24480 at 5529.368 kb on - strand, within AO356_24480 at 5529.368 kb on - strand, within AO356_24480 at 5529.368 kb on - strand, within AO356_24480 at 5529.663 kb on + strand at 5529.663 kb on + strand at 5529.663 kb on + strand at 5529.663 kb on + strand at 5529.664 kb on - strand at 5529.664 kb on - strand at 5529.664 kb on - strand at 5529.664 kb on - strand at 5529.699 kb on - strand at 5529.740 kb on + strand at 5529.740 kb on + strand at 5529.740 kb on + strand at 5529.741 kb on - strand at 5529.983 kb on + strand, within AO356_24485 at 5529.983 kb on + strand, within AO356_24485 at 5530.402 kb on + strand, within AO356_24485 at 5530.403 kb on - strand, within AO356_24485 at 5530.525 kb on + strand at 5530.526 kb on - strand at 5530.535 kb on + strand at 5530.561 kb on - strand at 5530.629 kb on + strand at 5530.629 kb on + strand at 5530.629 kb on + strand at 5531.209 kb on + strand at 5531.258 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose (C) remove 5,528,847 + -0.3 5,528,847 + +0.6 5,528,847 + -0.0 5,528,848 - -1.1 5,528,937 + +0.3 5,528,937 + +0.4 5,528,938 - -0.2 5,528,944 + -2.3 5,528,944 + +0.4 5,528,945 - -0.2 5,528,945 - +0.7 5,529,198 + AO356_24480 0.34 +0.3 5,529,198 + AO356_24480 0.34 +0.5 5,529,198 + AO356_24480 0.34 +0.6 5,529,198 + AO356_24480 0.34 -0.3 5,529,198 + AO356_24480 0.34 +0.8 5,529,199 - AO356_24480 0.34 +0.7 5,529,199 - AO356_24480 0.34 +0.2 5,529,213 + AO356_24480 0.36 -0.1 5,529,214 - AO356_24480 0.36 +1.0 5,529,223 + AO356_24480 0.37 +0.0 5,529,223 + AO356_24480 0.37 -0.9 5,529,224 - AO356_24480 0.38 -0.4 5,529,345 + AO356_24480 0.53 +0.1 5,529,346 - AO356_24480 0.53 +0.7 5,529,346 - AO356_24480 0.53 +0.2 5,529,348 + AO356_24480 0.54 -0.2 5,529,367 + AO356_24480 0.56 +0.6 5,529,367 + AO356_24480 0.56 +0.2 5,529,368 - AO356_24480 0.56 +0.5 5,529,368 - AO356_24480 0.56 -0.0 5,529,368 - AO356_24480 0.56 -0.2 5,529,663 + +0.3 5,529,663 + -0.1 5,529,663 + -0.7 5,529,663 + +0.4 5,529,664 - -0.1 5,529,664 - -0.9 5,529,664 - -0.5 5,529,664 - -1.1 5,529,699 - -0.2 5,529,740 + +0.3 5,529,740 + -1.5 5,529,740 + +0.3 5,529,741 - -1.2 5,529,983 + AO356_24485 0.28 -0.7 5,529,983 + AO356_24485 0.28 -1.2 5,530,402 + AO356_24485 0.83 -0.7 5,530,403 - AO356_24485 0.84 -1.1 5,530,525 + +0.0 5,530,526 - -0.1 5,530,535 + -0.3 5,530,561 - -0.5 5,530,629 + -0.5 5,530,629 + +0.3 5,530,629 + -0.8 5,531,209 + +0.9 5,531,258 + +0.6
Or see this region's nucleotide sequence