Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18040

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_18030 and AO356_18035 overlap by 11 nucleotidesAO356_18035 and AO356_18040 are separated by 14 nucleotidesAO356_18040 and AO356_18045 overlap by 1 nucleotides AO356_18030: AO356_18030 - 4-hydroxybenzoyl-CoA thioesterase, at 4,066,945 to 4,067,412 _18030 AO356_18035: AO356_18035 - protein TolQ, at 4,067,402 to 4,068,097 _18035 AO356_18040: AO356_18040 - protein TolR, at 4,068,112 to 4,068,573 _18040 AO356_18045: AO356_18045 - protein TolA, at 4,068,573 to 4,069,652 _18045 Position (kb) 4068 4069Strain fitness (log2 ratio) -1 0 1 2at 4067.123 kb on + strand, within AO356_18030at 4067.123 kb on + strand, within AO356_18030at 4067.189 kb on + strand, within AO356_18030at 4067.189 kb on + strand, within AO356_18030at 4067.189 kb on + strand, within AO356_18030at 4067.189 kb on + strand, within AO356_18030at 4067.189 kb on + strand, within AO356_18030at 4067.189 kb on + strand, within AO356_18030at 4067.253 kb on + strand, within AO356_18030at 4067.310 kb on + strand, within AO356_18030at 4067.310 kb on + strand, within AO356_18030at 4067.310 kb on + strand, within AO356_18030at 4067.310 kb on + strand, within AO356_18030at 4067.310 kb on + strand, within AO356_18030at 4067.342 kb on + strand, within AO356_18030at 4068.073 kb on + strandat 4068.073 kb on + strandat 4068.073 kb on + strandat 4068.095 kb on + strandat 4068.095 kb on + strandat 4068.095 kb on + strandat 4068.609 kb on + strandat 4068.609 kb on + strandat 4068.609 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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4,067,123 + AO356_18030 0.38 +1.0
4,067,123 + AO356_18030 0.38 -0.2
4,067,189 + AO356_18030 0.52 +0.9
4,067,189 + AO356_18030 0.52 +0.1
4,067,189 + AO356_18030 0.52 +0.2
4,067,189 + AO356_18030 0.52 -0.7
4,067,189 + AO356_18030 0.52 +0.1
4,067,189 + AO356_18030 0.52 +0.9
4,067,253 + AO356_18030 0.66 +0.3
4,067,310 + AO356_18030 0.78 +0.7
4,067,310 + AO356_18030 0.78 +1.0
4,067,310 + AO356_18030 0.78 -0.1
4,067,310 + AO356_18030 0.78 -0.3
4,067,310 + AO356_18030 0.78 -0.2
4,067,342 + AO356_18030 0.85 +0.5
4,068,073 + +0.9
4,068,073 + +0.3
4,068,073 + +2.1
4,068,095 + +0.6
4,068,095 + +1.0
4,068,095 + +0.7
4,068,609 + +1.3
4,068,609 + +0.0
4,068,609 + +0.7

Or see this region's nucleotide sequence