Experiment: D-Trehalose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03920 and AO356_03925 are separated by 70 nucleotides AO356_03925 and AO356_03930 are separated by 49 nucleotides AO356_03930 and AO356_03935 are separated by 247 nucleotides
AO356_03920: AO356_03920 - flagellar basal body L-ring protein, at 872,956 to 873,651
_03920
AO356_03925: AO356_03925 - flagellar basal-body rod protein FlgG, at 873,722 to 874,507
_03925
AO356_03930: AO356_03930 - flagellar biosynthesis protein FlgF, at 874,557 to 875,294
_03930
AO356_03935: AO356_03935 - glycosyl transferase family 2, at 875,542 to 879,048
_03935
Position (kb) 874
875
876 Strain fitness (log2 ratio) -1
0
1
2
3 at 873.560 kb on + strand, within AO356_03920 at 873.560 kb on + strand, within AO356_03920 at 873.561 kb on - strand, within AO356_03920 at 873.561 kb on - strand, within AO356_03920 at 873.561 kb on - strand, within AO356_03920 at 873.561 kb on - strand, within AO356_03920 at 873.561 kb on - strand, within AO356_03920 at 873.561 kb on - strand, within AO356_03920 at 873.561 kb on - strand, within AO356_03920 at 873.563 kb on + strand, within AO356_03920 at 873.564 kb on - strand, within AO356_03920 at 873.637 kb on + strand at 873.637 kb on + strand at 873.638 kb on - strand at 873.657 kb on + strand at 873.657 kb on + strand at 873.657 kb on + strand at 873.657 kb on + strand at 873.657 kb on + strand at 873.657 kb on + strand at 873.658 kb on - strand at 873.697 kb on + strand at 873.697 kb on + strand at 873.698 kb on - strand at 873.698 kb on - strand at 873.698 kb on - strand at 873.698 kb on - strand at 873.701 kb on + strand at 873.701 kb on + strand at 873.701 kb on + strand at 873.701 kb on + strand at 873.702 kb on - strand at 873.702 kb on - strand at 873.702 kb on - strand at 873.723 kb on + strand at 873.724 kb on - strand at 874.153 kb on + strand, within AO356_03925 at 874.153 kb on + strand, within AO356_03925 at 874.154 kb on - strand, within AO356_03925 at 874.167 kb on + strand, within AO356_03925 at 874.168 kb on - strand, within AO356_03925 at 874.168 kb on - strand, within AO356_03925 at 874.292 kb on + strand, within AO356_03925 at 874.292 kb on + strand, within AO356_03925 at 874.293 kb on - strand, within AO356_03925 at 874.293 kb on - strand, within AO356_03925 at 874.364 kb on + strand, within AO356_03925 at 874.364 kb on + strand, within AO356_03925 at 874.371 kb on + strand, within AO356_03925 at 874.372 kb on - strand, within AO356_03925 at 874.372 kb on - strand, within AO356_03925 at 874.522 kb on - strand at 874.551 kb on + strand at 874.551 kb on + strand at 874.551 kb on + strand at 874.551 kb on + strand at 874.551 kb on + strand at 874.552 kb on - strand at 874.558 kb on + strand at 874.559 kb on - strand at 874.559 kb on - strand at 874.959 kb on + strand, within AO356_03930 at 874.999 kb on + strand, within AO356_03930 at 874.999 kb on + strand, within AO356_03930 at 875.000 kb on - strand, within AO356_03930 at 875.000 kb on - strand, within AO356_03930 at 875.000 kb on - strand, within AO356_03930 at 875.158 kb on - strand, within AO356_03930 at 875.158 kb on - strand, within AO356_03930 at 875.278 kb on + strand at 875.278 kb on + strand at 875.278 kb on + strand at 875.278 kb on + strand at 875.278 kb on + strand at 875.278 kb on + strand at 875.278 kb on + strand at 875.279 kb on - strand at 875.284 kb on + strand at 875.284 kb on + strand at 875.284 kb on + strand at 875.284 kb on + strand at 875.284 kb on + strand at 875.285 kb on - strand at 875.285 kb on - strand at 875.285 kb on - strand at 875.285 kb on - strand at 875.285 kb on - strand at 875.285 kb on - strand at 875.394 kb on + strand at 875.394 kb on + strand at 875.435 kb on + strand at 875.435 kb on + strand at 875.436 kb on - strand at 875.579 kb on + strand at 875.580 kb on - strand at 875.762 kb on + strand at 875.777 kb on + strand at 875.777 kb on + strand at 875.778 kb on - strand at 875.921 kb on + strand, within AO356_03935 at 875.921 kb on + strand, within AO356_03935 at 875.921 kb on + strand, within AO356_03935 at 875.945 kb on - strand, within AO356_03935 at 875.945 kb on - strand, within AO356_03935 at 876.031 kb on + strand, within AO356_03935 at 876.032 kb on - strand, within AO356_03935 at 876.032 kb on - strand, within AO356_03935 at 876.032 kb on - strand, within AO356_03935 at 876.267 kb on + strand, within AO356_03935
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose (C) remove 873,560 + AO356_03920 0.87 +0.8 873,560 + AO356_03920 0.87 +2.1 873,561 - AO356_03920 0.87 +2.7 873,561 - AO356_03920 0.87 +2.8 873,561 - AO356_03920 0.87 +2.1 873,561 - AO356_03920 0.87 +2.3 873,561 - AO356_03920 0.87 +2.6 873,561 - AO356_03920 0.87 +2.2 873,561 - AO356_03920 0.87 +2.0 873,563 + AO356_03920 0.87 +2.4 873,564 - AO356_03920 0.87 +2.4 873,637 + +2.6 873,637 + +2.5 873,638 - +2.4 873,657 + +2.1 873,657 + +2.4 873,657 + +2.3 873,657 + +2.3 873,657 + +2.3 873,657 + +2.6 873,658 - +1.2 873,697 + +1.8 873,697 + +2.2 873,698 - -0.2 873,698 - +0.4 873,698 - -0.0 873,698 - -0.4 873,701 + +2.4 873,701 + +2.8 873,701 + +2.3 873,701 + +2.2 873,702 - -0.8 873,702 - +0.2 873,702 - +0.4 873,723 + +1.9 873,724 - +0.5 874,153 + AO356_03925 0.55 +1.9 874,153 + AO356_03925 0.55 +2.6 874,154 - AO356_03925 0.55 +2.2 874,167 + AO356_03925 0.57 +1.7 874,168 - AO356_03925 0.57 +2.1 874,168 - AO356_03925 0.57 +2.6 874,292 + AO356_03925 0.73 +2.3 874,292 + AO356_03925 0.73 +2.0 874,293 - AO356_03925 0.73 +2.7 874,293 - AO356_03925 0.73 +1.3 874,364 + AO356_03925 0.82 +2.3 874,364 + AO356_03925 0.82 +2.5 874,371 + AO356_03925 0.83 +2.6 874,372 - AO356_03925 0.83 +2.3 874,372 - AO356_03925 0.83 +2.4 874,522 - +0.5 874,551 + +2.8 874,551 + +2.3 874,551 + +2.0 874,551 + +1.4 874,551 + +2.1 874,552 - +0.3 874,558 + +2.1 874,559 - +0.1 874,559 - -1.2 874,959 + AO356_03930 0.54 +1.9 874,999 + AO356_03930 0.60 +1.8 874,999 + AO356_03930 0.60 +2.0 875,000 - AO356_03930 0.60 +2.9 875,000 - AO356_03930 0.60 +2.3 875,000 - AO356_03930 0.60 +2.7 875,158 - AO356_03930 0.81 +1.6 875,158 - AO356_03930 0.81 +2.3 875,278 + +1.8 875,278 + +2.4 875,278 + +2.3 875,278 + +2.5 875,278 + +2.1 875,278 + +2.5 875,278 + +2.4 875,279 - +2.5 875,284 + +2.5 875,284 + +2.0 875,284 + +2.2 875,284 + +2.4 875,284 + +2.5 875,285 - +2.2 875,285 - +2.8 875,285 - +2.4 875,285 - +1.6 875,285 - +2.3 875,285 - +3.0 875,394 + +1.2 875,394 + +1.6 875,435 + +1.1 875,435 + +1.6 875,436 - +0.1 875,579 + +1.0 875,580 - +0.7 875,762 + +0.2 875,777 + +0.6 875,777 + +0.1 875,778 - +0.5 875,921 + AO356_03935 0.11 +0.3 875,921 + AO356_03935 0.11 -0.3 875,921 + AO356_03935 0.11 +0.4 875,945 - AO356_03935 0.11 -0.2 875,945 - AO356_03935 0.11 +0.1 876,031 + AO356_03935 0.14 +0.5 876,032 - AO356_03935 0.14 -0.1 876,032 - AO356_03935 0.14 +1.3 876,032 - AO356_03935 0.14 +0.1 876,267 + AO356_03935 0.21 -0.2
Or see this region's nucleotide sequence