Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03355

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03350 and AO356_03355 are separated by 4 nucleotidesAO356_03355 and AO356_03360 are separated by 14 nucleotides AO356_03350: AO356_03350 - glycosyl transferase, at 745,651 to 746,667 _03350 AO356_03355: AO356_03355 - hypothetical protein, at 746,672 to 747,628 _03355 AO356_03360: AO356_03360 - hypothetical protein, at 747,643 to 748,884 _03360 Position (kb) 746 747 748Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 745.709 kb on + strandat 745.710 kb on - strandat 745.718 kb on - strandat 745.720 kb on + strandat 745.720 kb on + strandat 745.875 kb on - strand, within AO356_03350at 745.881 kb on + strand, within AO356_03350at 745.882 kb on - strand, within AO356_03350at 745.882 kb on - strand, within AO356_03350at 745.882 kb on - strand, within AO356_03350at 745.892 kb on - strand, within AO356_03350at 745.911 kb on + strand, within AO356_03350at 745.912 kb on - strand, within AO356_03350at 745.912 kb on - strand, within AO356_03350at 745.912 kb on - strand, within AO356_03350at 745.969 kb on - strand, within AO356_03350at 746.050 kb on - strand, within AO356_03350at 746.098 kb on + strand, within AO356_03350at 746.101 kb on + strand, within AO356_03350at 746.102 kb on - strand, within AO356_03350at 746.219 kb on + strand, within AO356_03350at 746.226 kb on + strand, within AO356_03350at 746.226 kb on + strand, within AO356_03350at 746.227 kb on - strand, within AO356_03350at 746.227 kb on - strand, within AO356_03350at 746.243 kb on + strand, within AO356_03350at 746.460 kb on + strand, within AO356_03350at 746.460 kb on + strand, within AO356_03350at 746.460 kb on + strand, within AO356_03350at 746.460 kb on + strand, within AO356_03350at 746.460 kb on + strand, within AO356_03350at 746.497 kb on + strand, within AO356_03350at 746.509 kb on + strand, within AO356_03350at 746.509 kb on + strand, within AO356_03350at 746.509 kb on + strand, within AO356_03350at 746.510 kb on - strand, within AO356_03350at 746.705 kb on - strandat 746.705 kb on - strandat 746.705 kb on - strandat 746.705 kb on - strandat 746.706 kb on + strandat 746.706 kb on + strandat 746.706 kb on + strandat 746.707 kb on - strandat 746.837 kb on + strand, within AO356_03355at 746.838 kb on - strand, within AO356_03355at 746.875 kb on - strand, within AO356_03355at 746.990 kb on - strand, within AO356_03355at 746.992 kb on + strand, within AO356_03355at 746.993 kb on - strand, within AO356_03355at 747.093 kb on - strand, within AO356_03355at 747.418 kb on + strand, within AO356_03355at 747.440 kb on + strand, within AO356_03355at 747.464 kb on + strand, within AO356_03355at 747.504 kb on + strand, within AO356_03355at 747.505 kb on - strand, within AO356_03355at 747.542 kb on + strandat 747.543 kb on - strandat 747.543 kb on - strandat 747.552 kb on - strandat 747.581 kb on - strandat 747.597 kb on - strandat 747.600 kb on + strandat 747.676 kb on - strandat 747.676 kb on - strandat 747.878 kb on + strand, within AO356_03360at 747.879 kb on - strand, within AO356_03360at 747.895 kb on + strand, within AO356_03360at 748.078 kb on - strand, within AO356_03360at 748.509 kb on - strand, within AO356_03360

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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745,709 + -3.8
745,710 - -2.2
745,718 - -2.7
745,720 + -1.9
745,720 + -1.9
745,875 - AO356_03350 0.22 -1.5
745,881 + AO356_03350 0.23 -1.8
745,882 - AO356_03350 0.23 -2.2
745,882 - AO356_03350 0.23 -2.1
745,882 - AO356_03350 0.23 -2.1
745,892 - AO356_03350 0.24 -2.1
745,911 + AO356_03350 0.26 -3.3
745,912 - AO356_03350 0.26 -4.1
745,912 - AO356_03350 0.26 -0.7
745,912 - AO356_03350 0.26 -0.7
745,969 - AO356_03350 0.31 -2.5
746,050 - AO356_03350 0.39 -2.3
746,098 + AO356_03350 0.44 -2.0
746,101 + AO356_03350 0.44 -2.1
746,102 - AO356_03350 0.44 -1.8
746,219 + AO356_03350 0.56 -2.3
746,226 + AO356_03350 0.57 -2.7
746,226 + AO356_03350 0.57 -2.8
746,227 - AO356_03350 0.57 -0.7
746,227 - AO356_03350 0.57 -1.9
746,243 + AO356_03350 0.58 -1.7
746,460 + AO356_03350 0.80 -1.0
746,460 + AO356_03350 0.80 -3.3
746,460 + AO356_03350 0.80 -3.1
746,460 + AO356_03350 0.80 -1.3
746,460 + AO356_03350 0.80 -2.5
746,497 + AO356_03350 0.83 -1.9
746,509 + AO356_03350 0.84 -2.5
746,509 + AO356_03350 0.84 -2.7
746,509 + AO356_03350 0.84 -1.0
746,510 - AO356_03350 0.84 -0.9
746,705 - -0.4
746,705 - -0.2
746,705 - -1.4
746,705 - -0.4
746,706 + -2.7
746,706 + -4.1
746,706 + -2.3
746,707 - -0.7
746,837 + AO356_03355 0.17 -0.8
746,838 - AO356_03355 0.17 -1.7
746,875 - AO356_03355 0.21 -1.3
746,990 - AO356_03355 0.33 -0.8
746,992 + AO356_03355 0.33 -1.7
746,993 - AO356_03355 0.34 -3.2
747,093 - AO356_03355 0.44 -2.4
747,418 + AO356_03355 0.78 -1.6
747,440 + AO356_03355 0.80 -1.3
747,464 + AO356_03355 0.83 -1.1
747,504 + AO356_03355 0.87 -2.7
747,505 - AO356_03355 0.87 -2.2
747,542 + -1.5
747,543 - -1.5
747,543 - -0.9
747,552 - -0.9
747,581 - +0.1
747,597 - +0.3
747,600 + -2.1
747,676 - -1.7
747,676 - -2.2
747,878 + AO356_03360 0.19 -1.8
747,879 - AO356_03360 0.19 -2.3
747,895 + AO356_03360 0.20 -1.5
748,078 - AO356_03360 0.35 -0.9
748,509 - AO356_03360 0.70 -2.4

Or see this region's nucleotide sequence