Experiment: D-Trehalose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03070 and AO356_03075 overlap by 17 nucleotides AO356_03075 and AO356_03080 overlap by 4 nucleotides AO356_03080 and AO356_03085 are separated by 186 nucleotides
AO356_03070: AO356_03070 - histidine kinase, at 686,542 to 688,863
_03070
AO356_03075: AO356_03075 - MarR family transcriptional regulator, at 688,847 to 689,308
_03075
AO356_03080: AO356_03080 - glutathione peroxidase, at 689,305 to 689,790
_03080
AO356_03085: AO356_03085 - peptide methionine sulfoxide reductase, at 689,977 to 690,372
_03085
Position (kb) 688
689
690 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 687.988 kb on + strand, within AO356_03070 at 687.988 kb on + strand, within AO356_03070 at 687.988 kb on + strand, within AO356_03070 at 687.988 kb on + strand, within AO356_03070 at 687.988 kb on + strand, within AO356_03070 at 687.988 kb on + strand, within AO356_03070 at 687.988 kb on + strand, within AO356_03070 at 687.988 kb on + strand, within AO356_03070 at 687.989 kb on - strand, within AO356_03070 at 687.989 kb on - strand, within AO356_03070 at 687.989 kb on - strand, within AO356_03070 at 687.989 kb on - strand, within AO356_03070 at 687.989 kb on - strand, within AO356_03070 at 687.989 kb on - strand, within AO356_03070 at 687.989 kb on - strand, within AO356_03070 at 688.161 kb on - strand, within AO356_03070 at 688.161 kb on - strand, within AO356_03070 at 688.195 kb on + strand, within AO356_03070 at 688.195 kb on + strand, within AO356_03070 at 688.195 kb on + strand, within AO356_03070 at 688.196 kb on - strand, within AO356_03070 at 688.321 kb on + strand, within AO356_03070 at 688.322 kb on - strand, within AO356_03070 at 688.371 kb on - strand, within AO356_03070 at 688.371 kb on - strand, within AO356_03070 at 688.371 kb on - strand, within AO356_03070 at 688.371 kb on - strand, within AO356_03070 at 688.786 kb on + strand at 688.787 kb on - strand at 688.787 kb on - strand at 688.787 kb on - strand at 688.848 kb on + strand at 688.849 kb on - strand at 688.849 kb on - strand at 688.849 kb on - strand at 689.178 kb on + strand, within AO356_03075 at 689.178 kb on + strand, within AO356_03075 at 689.179 kb on - strand, within AO356_03075 at 689.187 kb on + strand, within AO356_03075 at 689.187 kb on + strand, within AO356_03075 at 689.220 kb on + strand, within AO356_03075 at 689.250 kb on + strand, within AO356_03075 at 689.250 kb on + strand, within AO356_03075 at 689.250 kb on + strand, within AO356_03075 at 689.251 kb on - strand, within AO356_03075 at 689.458 kb on - strand, within AO356_03080 at 689.458 kb on - strand, within AO356_03080 at 689.633 kb on + strand, within AO356_03080 at 689.633 kb on + strand, within AO356_03080 at 689.633 kb on + strand, within AO356_03080 at 689.633 kb on + strand, within AO356_03080 at 689.633 kb on + strand, within AO356_03080 at 689.634 kb on - strand, within AO356_03080 at 689.634 kb on - strand, within AO356_03080 at 689.634 kb on - strand, within AO356_03080 at 689.634 kb on - strand, within AO356_03080 at 689.663 kb on + strand, within AO356_03080 at 689.664 kb on - strand, within AO356_03080 at 689.664 kb on - strand, within AO356_03080 at 689.664 kb on - strand, within AO356_03080 at 689.664 kb on - strand, within AO356_03080 at 689.805 kb on + strand at 689.805 kb on + strand at 689.805 kb on + strand at 689.806 kb on - strand at 689.853 kb on - strand at 689.855 kb on + strand at 689.971 kb on + strand at 689.971 kb on + strand at 689.971 kb on + strand at 689.971 kb on + strand at 689.972 kb on - strand at 689.972 kb on - strand at 690.020 kb on + strand, within AO356_03085 at 690.161 kb on + strand, within AO356_03085 at 690.161 kb on + strand, within AO356_03085 at 690.239 kb on + strand, within AO356_03085 at 690.239 kb on + strand, within AO356_03085 at 690.239 kb on + strand, within AO356_03085 at 690.240 kb on - strand, within AO356_03085 at 690.266 kb on + strand, within AO356_03085 at 690.266 kb on + strand, within AO356_03085 at 690.266 kb on + strand, within AO356_03085 at 690.266 kb on + strand, within AO356_03085 at 690.266 kb on + strand, within AO356_03085 at 690.267 kb on - strand, within AO356_03085 at 690.267 kb on - strand, within AO356_03085
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose (C) remove 687,988 + AO356_03070 0.62 +2.7 687,988 + AO356_03070 0.62 +2.2 687,988 + AO356_03070 0.62 +3.0 687,988 + AO356_03070 0.62 +2.2 687,988 + AO356_03070 0.62 +2.7 687,988 + AO356_03070 0.62 +3.0 687,988 + AO356_03070 0.62 +2.7 687,988 + AO356_03070 0.62 +2.9 687,989 - AO356_03070 0.62 +2.4 687,989 - AO356_03070 0.62 +2.1 687,989 - AO356_03070 0.62 +1.7 687,989 - AO356_03070 0.62 +2.3 687,989 - AO356_03070 0.62 +2.2 687,989 - AO356_03070 0.62 +2.7 687,989 - AO356_03070 0.62 +2.7 688,161 - AO356_03070 0.70 +2.9 688,161 - AO356_03070 0.70 +2.3 688,195 + AO356_03070 0.71 +2.3 688,195 + AO356_03070 0.71 +2.5 688,195 + AO356_03070 0.71 +2.5 688,196 - AO356_03070 0.71 +2.3 688,321 + AO356_03070 0.77 +2.5 688,322 - AO356_03070 0.77 +3.0 688,371 - AO356_03070 0.79 +2.3 688,371 - AO356_03070 0.79 +3.4 688,371 - AO356_03070 0.79 +2.7 688,371 - AO356_03070 0.79 +2.5 688,786 + +2.2 688,787 - +1.8 688,787 - +2.7 688,787 - +2.3 688,848 + -0.4 688,849 - +1.2 688,849 - +1.4 688,849 - +0.5 689,178 + AO356_03075 0.72 +0.2 689,178 + AO356_03075 0.72 +1.3 689,179 - AO356_03075 0.72 +0.8 689,187 + AO356_03075 0.74 -0.4 689,187 + AO356_03075 0.74 +0.7 689,220 + AO356_03075 0.81 +0.9 689,250 + AO356_03075 0.87 -0.2 689,250 + AO356_03075 0.87 -0.1 689,250 + AO356_03075 0.87 -0.1 689,251 - AO356_03075 0.87 +0.9 689,458 - AO356_03080 0.31 -0.3 689,458 - AO356_03080 0.31 +1.0 689,633 + AO356_03080 0.67 +0.3 689,633 + AO356_03080 0.67 +0.3 689,633 + AO356_03080 0.67 +0.7 689,633 + AO356_03080 0.67 +0.7 689,633 + AO356_03080 0.67 -0.0 689,634 - AO356_03080 0.68 +0.5 689,634 - AO356_03080 0.68 -0.4 689,634 - AO356_03080 0.68 +1.0 689,634 - AO356_03080 0.68 +0.2 689,663 + AO356_03080 0.74 -1.1 689,664 - AO356_03080 0.74 -1.5 689,664 - AO356_03080 0.74 -0.1 689,664 - AO356_03080 0.74 +0.9 689,664 - AO356_03080 0.74 -2.9 689,805 + +0.7 689,805 + +0.3 689,805 + +0.7 689,806 - -0.7 689,853 - +0.8 689,855 + +0.4 689,971 + +0.2 689,971 + +0.6 689,971 + +0.8 689,971 + +0.0 689,972 - -0.0 689,972 - +0.1 690,020 + AO356_03085 0.11 +0.7 690,161 + AO356_03085 0.46 -0.4 690,161 + AO356_03085 0.46 -0.4 690,239 + AO356_03085 0.66 +0.8 690,239 + AO356_03085 0.66 -0.3 690,239 + AO356_03085 0.66 +0.1 690,240 - AO356_03085 0.66 -0.3 690,266 + AO356_03085 0.73 +0.8 690,266 + AO356_03085 0.73 -0.0 690,266 + AO356_03085 0.73 -1.8 690,266 + AO356_03085 0.73 -0.1 690,266 + AO356_03085 0.73 +1.7 690,267 - AO356_03085 0.73 -0.3 690,267 - AO356_03085 0.73 +0.6
Or see this region's nucleotide sequence