Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03065

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03055 and AO356_03060 are separated by 0 nucleotidesAO356_03060 and AO356_03065 overlap by 4 nucleotidesAO356_03065 and AO356_03070 are separated by 163 nucleotides AO356_03055: AO356_03055 - hypothetical protein, at 682,060 to 685,008 _03055 AO356_03060: AO356_03060 - GAF domain-containing protein, at 685,009 to 685,491 _03060 AO356_03065: AO356_03065 - AAA family ATPase, at 685,488 to 686,378 _03065 AO356_03070: AO356_03070 - histidine kinase, at 686,542 to 688,863 _03070 Position (kb) 685 686 687Strain fitness (log2 ratio) -2 -1 0 1 2 3at 684.526 kb on + strand, within AO356_03055at 684.526 kb on + strand, within AO356_03055at 684.526 kb on + strand, within AO356_03055at 684.526 kb on + strand, within AO356_03055at 684.527 kb on - strand, within AO356_03055at 684.544 kb on + strand, within AO356_03055at 684.544 kb on + strand, within AO356_03055at 684.545 kb on - strand, within AO356_03055at 684.545 kb on - strand, within AO356_03055at 684.589 kb on + strand, within AO356_03055at 684.589 kb on + strand, within AO356_03055at 684.589 kb on + strand, within AO356_03055at 684.590 kb on - strand, within AO356_03055at 684.590 kb on - strand, within AO356_03055at 684.590 kb on - strand, within AO356_03055at 684.590 kb on - strand, within AO356_03055at 684.590 kb on - strand, within AO356_03055at 684.590 kb on - strand, within AO356_03055at 684.590 kb on - strand, within AO356_03055at 684.808 kb on + strandat 684.808 kb on + strandat 684.808 kb on + strandat 684.808 kb on + strandat 684.809 kb on - strandat 684.916 kb on + strandat 684.916 kb on + strandat 684.916 kb on + strandat 685.034 kb on - strandat 685.075 kb on - strand, within AO356_03060at 685.329 kb on - strand, within AO356_03060at 685.329 kb on - strand, within AO356_03060at 685.329 kb on - strand, within AO356_03060at 685.540 kb on + strandat 685.697 kb on - strand, within AO356_03065at 685.843 kb on + strand, within AO356_03065at 685.843 kb on + strand, within AO356_03065at 685.843 kb on + strand, within AO356_03065at 685.843 kb on + strand, within AO356_03065at 685.844 kb on - strand, within AO356_03065at 685.844 kb on - strand, within AO356_03065at 685.844 kb on - strand, within AO356_03065at 685.844 kb on - strand, within AO356_03065at 686.236 kb on + strand, within AO356_03065at 686.404 kb on + strandat 686.404 kb on + strandat 686.405 kb on - strandat 686.405 kb on - strandat 686.405 kb on - strandat 686.405 kb on - strandat 686.405 kb on - strandat 686.405 kb on - strandat 686.405 kb on - strandat 686.450 kb on + strandat 686.450 kb on + strandat 686.451 kb on - strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.463 kb on - strandat 686.463 kb on - strandat 686.463 kb on - strandat 686.463 kb on - strandat 686.463 kb on - strandat 686.499 kb on + strandat 686.499 kb on + strandat 686.499 kb on + strandat 686.499 kb on + strandat 686.499 kb on + strandat 686.500 kb on - strandat 686.500 kb on - strandat 686.524 kb on + strandat 686.524 kb on + strandat 686.525 kb on - strandat 686.525 kb on - strandat 686.525 kb on - strandat 686.572 kb on + strandat 686.572 kb on + strandat 686.572 kb on + strandat 686.573 kb on - strandat 686.574 kb on + strandat 686.575 kb on - strandat 686.575 kb on - strandat 686.651 kb on - strandat 686.651 kb on - strandat 686.731 kb on + strandat 686.731 kb on + strandat 686.731 kb on + strandat 686.731 kb on + strandat 686.731 kb on + strandat 686.732 kb on - strandat 686.732 kb on - strandat 686.732 kb on - strandat 686.823 kb on + strand, within AO356_03070at 686.824 kb on - strand, within AO356_03070at 686.824 kb on - strand, within AO356_03070at 686.923 kb on + strand, within AO356_03070at 686.924 kb on - strand, within AO356_03070at 686.980 kb on + strand, within AO356_03070at 686.980 kb on + strand, within AO356_03070at 686.980 kb on + strand, within AO356_03070at 686.980 kb on + strand, within AO356_03070at 686.981 kb on - strand, within AO356_03070at 686.981 kb on - strand, within AO356_03070at 686.981 kb on - strand, within AO356_03070at 687.079 kb on + strand, within AO356_03070at 687.079 kb on + strand, within AO356_03070at 687.080 kb on - strand, within AO356_03070at 687.080 kb on - strand, within AO356_03070at 687.080 kb on - strand, within AO356_03070at 687.080 kb on - strand, within AO356_03070at 687.235 kb on - strand, within AO356_03070at 687.235 kb on - strand, within AO356_03070at 687.286 kb on + strand, within AO356_03070at 687.286 kb on + strand, within AO356_03070

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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684,526 + AO356_03055 0.84 +0.3
684,526 + AO356_03055 0.84 +0.5
684,526 + AO356_03055 0.84 -1.1
684,526 + AO356_03055 0.84 +0.7
684,527 - AO356_03055 0.84 +0.1
684,544 + AO356_03055 0.84 -0.3
684,544 + AO356_03055 0.84 +0.9
684,545 - AO356_03055 0.84 +0.5
684,545 - AO356_03055 0.84 +0.7
684,589 + AO356_03055 0.86 -1.5
684,589 + AO356_03055 0.86 -0.7
684,589 + AO356_03055 0.86 -0.5
684,590 - AO356_03055 0.86 -0.5
684,590 - AO356_03055 0.86 +0.5
684,590 - AO356_03055 0.86 +0.4
684,590 - AO356_03055 0.86 -1.2
684,590 - AO356_03055 0.86 +0.2
684,590 - AO356_03055 0.86 -0.0
684,590 - AO356_03055 0.86 -0.6
684,808 + +0.9
684,808 + +0.3
684,808 + +0.4
684,808 + +0.6
684,809 - +0.8
684,916 + +0.2
684,916 + -1.5
684,916 + -1.1
685,034 - -0.8
685,075 - AO356_03060 0.14 -0.2
685,329 - AO356_03060 0.66 -0.1
685,329 - AO356_03060 0.66 -0.5
685,329 - AO356_03060 0.66 +0.2
685,540 + -0.0
685,697 - AO356_03065 0.23 +0.3
685,843 + AO356_03065 0.40 -0.9
685,843 + AO356_03065 0.40 -0.8
685,843 + AO356_03065 0.40 -0.3
685,843 + AO356_03065 0.40 -0.8
685,844 - AO356_03065 0.40 +0.5
685,844 - AO356_03065 0.40 +0.1
685,844 - AO356_03065 0.40 +0.5
685,844 - AO356_03065 0.40 -0.3
686,236 + AO356_03065 0.84 -0.1
686,404 + -1.5
686,404 + +0.4
686,405 - +0.8
686,405 - +0.5
686,405 - +1.0
686,405 - +0.5
686,405 - +1.3
686,405 - +0.1
686,405 - +1.1
686,450 + -1.0
686,450 + -1.2
686,451 - +0.9
686,462 + -1.3
686,462 + -0.8
686,462 + -1.6
686,462 + -2.4
686,462 + -1.6
686,462 + -1.7
686,462 + -0.5
686,462 + -0.9
686,462 + -1.1
686,463 - +0.8
686,463 - +1.2
686,463 - +1.7
686,463 - +0.9
686,463 - +0.9
686,499 + -0.5
686,499 + +0.2
686,499 + -1.3
686,499 + -1.1
686,499 + -0.7
686,500 - +1.2
686,500 - +1.2
686,524 + -2.6
686,524 + -2.0
686,525 - +2.6
686,525 - +3.1
686,525 - +2.1
686,572 + +2.5
686,572 + +2.7
686,572 + +2.0
686,573 - +2.7
686,574 + +3.4
686,575 - +2.8
686,575 - +2.5
686,651 - +2.5
686,651 - +2.5
686,731 + +3.2
686,731 + +2.7
686,731 + +2.8
686,731 + +1.9
686,731 + +2.7
686,732 - +3.0
686,732 - +2.7
686,732 - +2.7
686,823 + AO356_03070 0.12 +3.2
686,824 - AO356_03070 0.12 +2.4
686,824 - AO356_03070 0.12 +2.2
686,923 + AO356_03070 0.16 +2.5
686,924 - AO356_03070 0.16 +2.0
686,980 + AO356_03070 0.19 -0.8
686,980 + AO356_03070 0.19 +2.9
686,980 + AO356_03070 0.19 +3.1
686,980 + AO356_03070 0.19 +3.0
686,981 - AO356_03070 0.19 +2.0
686,981 - AO356_03070 0.19 +2.5
686,981 - AO356_03070 0.19 +3.5
687,079 + AO356_03070 0.23 +3.1
687,079 + AO356_03070 0.23 +2.9
687,080 - AO356_03070 0.23 +2.8
687,080 - AO356_03070 0.23 +1.9
687,080 - AO356_03070 0.23 +2.1
687,080 - AO356_03070 0.23 +2.6
687,235 - AO356_03070 0.30 +2.8
687,235 - AO356_03070 0.30 +2.0
687,286 + AO356_03070 0.32 +2.0
687,286 + AO356_03070 0.32 +3.1

Or see this region's nucleotide sequence