Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00880

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00865 and AO356_00870 are separated by 316 nucleotidesAO356_00870 and AO356_00875 are separated by 90 nucleotidesAO356_00875 and AO356_00880 overlap by 20 nucleotidesAO356_00880 and AO356_00885 are separated by 3 nucleotides AO356_00865: AO356_00865 - DNA helicase, at 197,925 to 204,551 _00865 AO356_00870: AO356_00870 - tRNA-Pro, at 204,868 to 204,944 _00870 AO356_00875: AO356_00875 - MerR family transcriptional regulator, at 205,035 to 205,391 _00875 AO356_00880: AO356_00880 - integration host factor subunit alpha, at 205,372 to 205,674 _00880 AO356_00885: AO356_00885 - phenylalanine--tRNA ligase subunit beta, at 205,678 to 208,056 _00885 Position (kb) 205 206Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 204.429 kb on + strandat 204.430 kb on - strandat 204.430 kb on - strandat 204.432 kb on + strandat 204.432 kb on + strandat 204.433 kb on - strandat 204.433 kb on - strandat 204.495 kb on + strandat 204.496 kb on - strandat 204.496 kb on - strandat 204.496 kb on - strandat 204.503 kb on + strandat 204.572 kb on - strandat 204.657 kb on - strandat 204.657 kb on - strandat 204.659 kb on + strandat 204.659 kb on + strandat 204.659 kb on + strandat 204.659 kb on + strandat 204.659 kb on + strandat 204.660 kb on - strandat 204.667 kb on + strandat 204.667 kb on + strandat 204.667 kb on + strandat 204.668 kb on - strandat 204.670 kb on + strandat 204.670 kb on + strandat 204.671 kb on - strandat 204.671 kb on - strandat 204.671 kb on - strandat 204.710 kb on + strandat 204.740 kb on + strandat 204.823 kb on + strandat 204.865 kb on - strandat 204.867 kb on - strandat 204.915 kb on + strand, within AO356_00870at 204.916 kb on - strand, within AO356_00870at 204.916 kb on - strand, within AO356_00870at 205.018 kb on + strandat 205.023 kb on - strandat 205.100 kb on - strand, within AO356_00875at 205.100 kb on - strand, within AO356_00875at 205.109 kb on + strand, within AO356_00875at 205.110 kb on - strand, within AO356_00875at 205.110 kb on - strand, within AO356_00875at 205.222 kb on + strand, within AO356_00875at 205.223 kb on - strand, within AO356_00875at 205.225 kb on + strand, within AO356_00875at 205.226 kb on - strand, within AO356_00875at 205.226 kb on - strand, within AO356_00875at 205.303 kb on - strand, within AO356_00875at 205.303 kb on - strand, within AO356_00875at 205.391 kb on + strandat 205.391 kb on + strandat 205.392 kb on - strandat 205.579 kb on + strand, within AO356_00880at 205.635 kb on - strand, within AO356_00880at 205.635 kb on - strand, within AO356_00880at 205.674 kb on + strandat 205.674 kb on + strandat 205.675 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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204,429 + +0.7
204,430 - -0.0
204,430 - +0.8
204,432 + -0.2
204,432 + +0.4
204,433 - +0.3
204,433 - -0.2
204,495 + -0.6
204,496 - +0.7
204,496 - +0.6
204,496 - +0.2
204,503 + -1.0
204,572 - -1.8
204,657 - +0.2
204,657 - +0.7
204,659 + -0.4
204,659 + +0.2
204,659 + -0.2
204,659 + +0.2
204,659 + -0.6
204,660 - +0.0
204,667 + +0.5
204,667 + -0.3
204,667 + -0.3
204,668 - +0.1
204,670 + +0.6
204,670 + +0.3
204,671 - +0.9
204,671 - -0.0
204,671 - +0.6
204,710 + -0.4
204,740 + +0.4
204,823 + +0.6
204,865 - -0.0
204,867 - +1.9
204,915 + AO356_00870 0.61 -0.0
204,916 - AO356_00870 0.62 +0.4
204,916 - AO356_00870 0.62 -0.3
205,018 + -0.4
205,023 - -0.4
205,100 - AO356_00875 0.18 +1.5
205,100 - AO356_00875 0.18 -0.8
205,109 + AO356_00875 0.21 +0.0
205,110 - AO356_00875 0.21 -0.7
205,110 - AO356_00875 0.21 -0.1
205,222 + AO356_00875 0.52 -0.1
205,223 - AO356_00875 0.53 -2.0
205,225 + AO356_00875 0.53 -1.3
205,226 - AO356_00875 0.54 -0.5
205,226 - AO356_00875 0.54 -1.4
205,303 - AO356_00875 0.75 -2.8
205,303 - AO356_00875 0.75 -1.2
205,391 + +1.0
205,391 + -1.2
205,392 - -0.5
205,579 + AO356_00880 0.68 -0.8
205,635 - AO356_00880 0.87 -1.3
205,635 - AO356_00880 0.87 -2.4
205,674 + -1.1
205,674 + -1.5
205,675 - -1.2

Or see this region's nucleotide sequence