Experiment: D-Trehalose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00865 and AO356_00870 are separated by 316 nucleotides AO356_00870 and AO356_00875 are separated by 90 nucleotides AO356_00875 and AO356_00880 overlap by 20 nucleotides AO356_00880 and AO356_00885 are separated by 3 nucleotides
AO356_00865: AO356_00865 - DNA helicase, at 197,925 to 204,551
_00865
AO356_00870: AO356_00870 - tRNA-Pro, at 204,868 to 204,944
_00870
AO356_00875: AO356_00875 - MerR family transcriptional regulator, at 205,035 to 205,391
_00875
AO356_00880: AO356_00880 - integration host factor subunit alpha, at 205,372 to 205,674
_00880
AO356_00885: AO356_00885 - phenylalanine--tRNA ligase subunit beta, at 205,678 to 208,056
_00885
Position (kb)
205
206 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 204.429 kb on + strand at 204.430 kb on - strand at 204.430 kb on - strand at 204.432 kb on + strand at 204.432 kb on + strand at 204.433 kb on - strand at 204.433 kb on - strand at 204.495 kb on + strand at 204.496 kb on - strand at 204.496 kb on - strand at 204.496 kb on - strand at 204.503 kb on + strand at 204.572 kb on - strand at 204.657 kb on - strand at 204.657 kb on - strand at 204.659 kb on + strand at 204.659 kb on + strand at 204.659 kb on + strand at 204.659 kb on + strand at 204.659 kb on + strand at 204.660 kb on - strand at 204.667 kb on + strand at 204.667 kb on + strand at 204.667 kb on + strand at 204.668 kb on - strand at 204.670 kb on + strand at 204.670 kb on + strand at 204.671 kb on - strand at 204.671 kb on - strand at 204.671 kb on - strand at 204.710 kb on + strand at 204.740 kb on + strand at 204.823 kb on + strand at 204.865 kb on - strand at 204.867 kb on - strand at 204.915 kb on + strand, within AO356_00870 at 204.916 kb on - strand, within AO356_00870 at 204.916 kb on - strand, within AO356_00870 at 205.018 kb on + strand at 205.023 kb on - strand at 205.100 kb on - strand, within AO356_00875 at 205.100 kb on - strand, within AO356_00875 at 205.109 kb on + strand, within AO356_00875 at 205.110 kb on - strand, within AO356_00875 at 205.110 kb on - strand, within AO356_00875 at 205.222 kb on + strand, within AO356_00875 at 205.223 kb on - strand, within AO356_00875 at 205.225 kb on + strand, within AO356_00875 at 205.226 kb on - strand, within AO356_00875 at 205.226 kb on - strand, within AO356_00875 at 205.303 kb on - strand, within AO356_00875 at 205.303 kb on - strand, within AO356_00875 at 205.391 kb on + strand at 205.391 kb on + strand at 205.392 kb on - strand at 205.579 kb on + strand, within AO356_00880 at 205.635 kb on - strand, within AO356_00880 at 205.635 kb on - strand, within AO356_00880 at 205.674 kb on + strand at 205.674 kb on + strand at 205.675 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose (C) remove 204,429 + +0.7 204,430 - -0.0 204,430 - +0.8 204,432 + -0.2 204,432 + +0.4 204,433 - +0.3 204,433 - -0.2 204,495 + -0.6 204,496 - +0.7 204,496 - +0.6 204,496 - +0.2 204,503 + -1.0 204,572 - -1.8 204,657 - +0.2 204,657 - +0.7 204,659 + -0.4 204,659 + +0.2 204,659 + -0.2 204,659 + +0.2 204,659 + -0.6 204,660 - +0.0 204,667 + +0.5 204,667 + -0.3 204,667 + -0.3 204,668 - +0.1 204,670 + +0.6 204,670 + +0.3 204,671 - +0.9 204,671 - -0.0 204,671 - +0.6 204,710 + -0.4 204,740 + +0.4 204,823 + +0.6 204,865 - -0.0 204,867 - +1.9 204,915 + AO356_00870 0.61 -0.0 204,916 - AO356_00870 0.62 +0.4 204,916 - AO356_00870 0.62 -0.3 205,018 + -0.4 205,023 - -0.4 205,100 - AO356_00875 0.18 +1.5 205,100 - AO356_00875 0.18 -0.8 205,109 + AO356_00875 0.21 +0.0 205,110 - AO356_00875 0.21 -0.7 205,110 - AO356_00875 0.21 -0.1 205,222 + AO356_00875 0.52 -0.1 205,223 - AO356_00875 0.53 -2.0 205,225 + AO356_00875 0.53 -1.3 205,226 - AO356_00875 0.54 -0.5 205,226 - AO356_00875 0.54 -1.4 205,303 - AO356_00875 0.75 -2.8 205,303 - AO356_00875 0.75 -1.2 205,391 + +1.0 205,391 + -1.2 205,392 - -0.5 205,579 + AO356_00880 0.68 -0.8 205,635 - AO356_00880 0.87 -1.3 205,635 - AO356_00880 0.87 -2.4 205,674 + -1.1 205,674 + -1.5 205,675 - -1.2
Or see this region's nucleotide sequence