Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05995

Experiment: L-Threonine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS05990 and RR42_RS05995 are separated by 157 nucleotidesRR42_RS05995 and RR42_RS06000 are separated by 100 nucleotidesRR42_RS06000 and RR42_RS06005 are separated by 13 nucleotidesRR42_RS06005 and RR42_RS06010 are separated by 213 nucleotides RR42_RS05990: RR42_RS05990 - aromatic amino acid aminotransferase, at 1,316,825 to 1,318,021 _RS05990 RR42_RS05995: RR42_RS05995 - excinuclease ABC subunit B, at 1,318,179 to 1,320,281 _RS05995 RR42_RS06000: RR42_RS06000 - antibiotic biosynthesis monooxygenase, at 1,320,382 to 1,320,681 _RS06000 RR42_RS06005: RR42_RS06005 - hypothetical protein, at 1,320,695 to 1,321,030 _RS06005 RR42_RS06010: RR42_RS06010 - phosphotyrosine protein phosphatase, at 1,321,244 to 1,321,735 _RS06010 Position (kb) 1318 1319 1320 1321Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1317.265 kb on - strand, within RR42_RS05990at 1317.376 kb on - strand, within RR42_RS05990at 1317.511 kb on - strand, within RR42_RS05990at 1317.568 kb on - strand, within RR42_RS05990at 1317.568 kb on - strand, within RR42_RS05990at 1317.570 kb on + strand, within RR42_RS05990at 1317.576 kb on + strand, within RR42_RS05990at 1317.576 kb on + strand, within RR42_RS05990at 1317.576 kb on + strand, within RR42_RS05990at 1317.577 kb on - strand, within RR42_RS05990at 1317.795 kb on + strand, within RR42_RS05990at 1317.823 kb on - strand, within RR42_RS05990at 1317.909 kb on + strandat 1317.910 kb on - strandat 1317.910 kb on - strandat 1318.041 kb on + strandat 1318.041 kb on + strandat 1318.041 kb on + strandat 1318.041 kb on + strandat 1318.042 kb on - strandat 1318.042 kb on - strandat 1318.042 kb on - strandat 1318.042 kb on - strandat 1318.042 kb on - strandat 1318.042 kb on - strandat 1318.042 kb on - strandat 1318.042 kb on - strandat 1318.042 kb on - strandat 1318.046 kb on - strandat 1318.063 kb on + strandat 1318.111 kb on + strandat 1318.141 kb on + strandat 1318.141 kb on + strandat 1318.141 kb on + strandat 1318.141 kb on + strandat 1318.141 kb on + strandat 1318.142 kb on - strandat 1318.178 kb on + strandat 1318.179 kb on - strandat 1318.258 kb on - strandat 1318.266 kb on + strandat 1318.266 kb on + strandat 1318.336 kb on - strandat 1318.456 kb on - strandat 1318.509 kb on + strand, within RR42_RS05995at 1318.510 kb on - strand, within RR42_RS05995at 1318.510 kb on - strand, within RR42_RS05995at 1318.510 kb on - strand, within RR42_RS05995at 1318.512 kb on + strand, within RR42_RS05995at 1318.513 kb on - strand, within RR42_RS05995at 1318.513 kb on - strand, within RR42_RS05995at 1318.518 kb on + strand, within RR42_RS05995at 1318.522 kb on - strand, within RR42_RS05995at 1318.522 kb on - strand, within RR42_RS05995at 1318.536 kb on + strand, within RR42_RS05995at 1318.537 kb on - strand, within RR42_RS05995at 1318.537 kb on - strand, within RR42_RS05995at 1318.589 kb on + strand, within RR42_RS05995at 1318.590 kb on - strand, within RR42_RS05995at 1318.671 kb on + strand, within RR42_RS05995at 1318.671 kb on + strand, within RR42_RS05995at 1318.671 kb on + strand, within RR42_RS05995at 1318.671 kb on + strand, within RR42_RS05995at 1318.671 kb on + strand, within RR42_RS05995at 1318.671 kb on + strand, within RR42_RS05995at 1318.671 kb on + strand, within RR42_RS05995at 1318.671 kb on + strand, within RR42_RS05995at 1318.671 kb on + strand, within RR42_RS05995at 1318.671 kb on + strand, within RR42_RS05995at 1318.671 kb on + strand, within RR42_RS05995at 1318.672 kb on - strand, within RR42_RS05995at 1318.672 kb on - strand, within RR42_RS05995at 1318.672 kb on - strand, within RR42_RS05995at 1318.696 kb on - strand, within RR42_RS05995at 1318.696 kb on - strand, within RR42_RS05995at 1318.776 kb on + strand, within RR42_RS05995at 1318.776 kb on + strand, within RR42_RS05995at 1318.777 kb on - strand, within RR42_RS05995at 1318.777 kb on - strand, within RR42_RS05995at 1318.829 kb on + strand, within RR42_RS05995at 1318.981 kb on - strand, within RR42_RS05995at 1318.981 kb on - strand, within RR42_RS05995at 1318.981 kb on - strand, within RR42_RS05995at 1318.981 kb on - strand, within RR42_RS05995at 1319.029 kb on + strand, within RR42_RS05995at 1319.029 kb on + strand, within RR42_RS05995at 1319.029 kb on + strand, within RR42_RS05995at 1319.030 kb on - strand, within RR42_RS05995at 1319.058 kb on + strand, within RR42_RS05995at 1319.058 kb on + strand, within RR42_RS05995at 1319.058 kb on + strand, within RR42_RS05995at 1319.059 kb on - strand, within RR42_RS05995at 1319.060 kb on + strand, within RR42_RS05995at 1319.060 kb on + strand, within RR42_RS05995at 1319.061 kb on - strand, within RR42_RS05995at 1319.286 kb on + strand, within RR42_RS05995at 1319.286 kb on + strand, within RR42_RS05995at 1319.286 kb on + strand, within RR42_RS05995at 1319.286 kb on + strand, within RR42_RS05995at 1319.286 kb on + strand, within RR42_RS05995at 1319.286 kb on + strand, within RR42_RS05995at 1319.286 kb on + strand, within RR42_RS05995at 1319.287 kb on - strand, within RR42_RS05995at 1319.287 kb on - strand, within RR42_RS05995at 1319.431 kb on - strand, within RR42_RS05995at 1319.431 kb on - strand, within RR42_RS05995at 1319.676 kb on - strand, within RR42_RS05995at 1320.033 kb on + strand, within RR42_RS05995at 1320.033 kb on + strand, within RR42_RS05995at 1320.034 kb on - strand, within RR42_RS05995at 1320.034 kb on - strand, within RR42_RS05995at 1320.095 kb on + strandat 1320.095 kb on + strandat 1320.096 kb on - strandat 1320.096 kb on - strandat 1320.096 kb on - strandat 1320.344 kb on + strandat 1320.345 kb on - strandat 1320.345 kb on - strandat 1320.473 kb on + strand, within RR42_RS06000at 1320.474 kb on - strand, within RR42_RS06000at 1321.040 kb on - strandat 1321.096 kb on - strandat 1321.254 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (N)
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1,317,265 - RR42_RS05990 0.37 -3.2
1,317,376 - RR42_RS05990 0.46 -2.7
1,317,511 - RR42_RS05990 0.57 -3.2
1,317,568 - RR42_RS05990 0.62 +0.8
1,317,568 - RR42_RS05990 0.62 -4.6
1,317,570 + RR42_RS05990 0.62 -2.4
1,317,576 + RR42_RS05990 0.63 -2.5
1,317,576 + RR42_RS05990 0.63 -3.2
1,317,576 + RR42_RS05990 0.63 -2.2
1,317,577 - RR42_RS05990 0.63 -2.9
1,317,795 + RR42_RS05990 0.81 -2.0
1,317,823 - RR42_RS05990 0.83 -3.5
1,317,909 + -3.5
1,317,910 - -4.5
1,317,910 - -2.5
1,318,041 + -3.0
1,318,041 + -2.8
1,318,041 + -3.2
1,318,041 + -1.7
1,318,042 - -1.3
1,318,042 - -1.2
1,318,042 - -2.5
1,318,042 - -2.8
1,318,042 - -1.8
1,318,042 - -1.5
1,318,042 - -2.1
1,318,042 - -3.5
1,318,042 - +0.8
1,318,046 - -2.0
1,318,063 + -1.5
1,318,111 + -2.8
1,318,141 + -0.2
1,318,141 + -1.3
1,318,141 + -0.3
1,318,141 + -1.3
1,318,141 + -0.0
1,318,142 - -0.3
1,318,178 + -0.2
1,318,179 - -0.2
1,318,258 - -0.2
1,318,266 + +0.2
1,318,266 + -1.0
1,318,336 - -0.0
1,318,456 - +2.4
1,318,509 + RR42_RS05995 0.16 -0.4
1,318,510 - RR42_RS05995 0.16 +0.1
1,318,510 - RR42_RS05995 0.16 +0.2
1,318,510 - RR42_RS05995 0.16 +0.6
1,318,512 + RR42_RS05995 0.16 +0.8
1,318,513 - RR42_RS05995 0.16 +0.6
1,318,513 - RR42_RS05995 0.16 -1.2
1,318,518 + RR42_RS05995 0.16 +1.4
1,318,522 - RR42_RS05995 0.16 +0.0
1,318,522 - RR42_RS05995 0.16 +0.2
1,318,536 + RR42_RS05995 0.17 +0.2
1,318,537 - RR42_RS05995 0.17 +0.5
1,318,537 - RR42_RS05995 0.17 -0.2
1,318,589 + RR42_RS05995 0.19 -2.7
1,318,590 - RR42_RS05995 0.20 -0.1
1,318,671 + RR42_RS05995 0.23 -1.9
1,318,671 + RR42_RS05995 0.23 -0.1
1,318,671 + RR42_RS05995 0.23 +0.9
1,318,671 + RR42_RS05995 0.23 +0.1
1,318,671 + RR42_RS05995 0.23 -0.5
1,318,671 + RR42_RS05995 0.23 -0.2
1,318,671 + RR42_RS05995 0.23 -0.2
1,318,671 + RR42_RS05995 0.23 -0.4
1,318,671 + RR42_RS05995 0.23 +1.8
1,318,671 + RR42_RS05995 0.23 -0.8
1,318,671 + RR42_RS05995 0.23 +0.5
1,318,672 - RR42_RS05995 0.23 -1.2
1,318,672 - RR42_RS05995 0.23 +0.3
1,318,672 - RR42_RS05995 0.23 -0.0
1,318,696 - RR42_RS05995 0.25 +3.7
1,318,696 - RR42_RS05995 0.25 +0.0
1,318,776 + RR42_RS05995 0.28 +0.3
1,318,776 + RR42_RS05995 0.28 -0.9
1,318,777 - RR42_RS05995 0.28 -0.1
1,318,777 - RR42_RS05995 0.28 -0.6
1,318,829 + RR42_RS05995 0.31 +0.8
1,318,981 - RR42_RS05995 0.38 -0.7
1,318,981 - RR42_RS05995 0.38 -2.2
1,318,981 - RR42_RS05995 0.38 +0.1
1,318,981 - RR42_RS05995 0.38 +0.5
1,319,029 + RR42_RS05995 0.40 -0.3
1,319,029 + RR42_RS05995 0.40 +0.0
1,319,029 + RR42_RS05995 0.40 +0.0
1,319,030 - RR42_RS05995 0.40 +2.8
1,319,058 + RR42_RS05995 0.42 -0.4
1,319,058 + RR42_RS05995 0.42 -0.1
1,319,058 + RR42_RS05995 0.42 +0.3
1,319,059 - RR42_RS05995 0.42 -0.4
1,319,060 + RR42_RS05995 0.42 +1.1
1,319,060 + RR42_RS05995 0.42 -0.2
1,319,061 - RR42_RS05995 0.42 +0.5
1,319,286 + RR42_RS05995 0.53 +0.4
1,319,286 + RR42_RS05995 0.53 -1.7
1,319,286 + RR42_RS05995 0.53 -1.5
1,319,286 + RR42_RS05995 0.53 -2.7
1,319,286 + RR42_RS05995 0.53 +0.8
1,319,286 + RR42_RS05995 0.53 +0.0
1,319,286 + RR42_RS05995 0.53 -1.6
1,319,287 - RR42_RS05995 0.53 +0.3
1,319,287 - RR42_RS05995 0.53 -0.9
1,319,431 - RR42_RS05995 0.60 +0.4
1,319,431 - RR42_RS05995 0.60 -0.5
1,319,676 - RR42_RS05995 0.71 -0.8
1,320,033 + RR42_RS05995 0.88 +0.2
1,320,033 + RR42_RS05995 0.88 -0.1
1,320,034 - RR42_RS05995 0.88 -0.1
1,320,034 - RR42_RS05995 0.88 -0.6
1,320,095 + -0.7
1,320,095 + -1.3
1,320,096 - +0.1
1,320,096 - -0.2
1,320,096 - -0.7
1,320,344 + -0.5
1,320,345 - -0.2
1,320,345 - -0.7
1,320,473 + RR42_RS06000 0.30 +0.6
1,320,474 - RR42_RS06000 0.31 -1.2
1,321,040 - +1.4
1,321,096 - +0.2
1,321,254 - -1.3

Or see this region's nucleotide sequence