Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08455

Experiment: R2A with m-arsenite 0.078125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS08440 and LRK54_RS08445 are separated by 88 nucleotidesLRK54_RS08445 and LRK54_RS08450 are separated by 4 nucleotidesLRK54_RS08450 and LRK54_RS08455 are separated by 11 nucleotidesLRK54_RS08455 and LRK54_RS08460 are separated by 55 nucleotidesLRK54_RS08460 and LRK54_RS08465 are separated by 221 nucleotides LRK54_RS08440: LRK54_RS08440 - pyridoxine 5'-phosphate synthase, at 1,841,453 to 1,842,196 _RS08440 LRK54_RS08445: LRK54_RS08445 - biopolymer transporter ExbD, at 1,842,285 to 1,842,689 _RS08445 LRK54_RS08450: LRK54_RS08450 - biopolymer transporter ExbD, at 1,842,694 to 1,843,116 _RS08450 LRK54_RS08455: LRK54_RS08455 - MotA/TolQ/ExbB proton channel family protein, at 1,843,128 to 1,843,901 _RS08455 LRK54_RS08460: LRK54_RS08460 - energy transducer TonB, at 1,843,957 to 1,844,616 _RS08460 LRK54_RS08465: LRK54_RS08465 - tetratricopeptide repeat protein, at 1,844,838 to 1,846,103 _RS08465 Position (kb) 1843 1844Strain fitness (log2 ratio) -1 0 1 2 3at 1843.103 kb on - strandat 1843.103 kb on - strandat 1843.913 kb on - strandat 1843.913 kb on - strandat 1843.913 kb on - strandat 1843.934 kb on + strandat 1843.934 kb on + strandat 1843.934 kb on + strandat 1843.934 kb on + strandat 1843.934 kb on + strandat 1843.934 kb on + strandat 1843.934 kb on + strandat 1843.934 kb on + strandat 1843.934 kb on + strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.940 kb on + strandat 1843.940 kb on + strandat 1843.941 kb on - strandat 1843.941 kb on - strandat 1843.941 kb on - strandat 1843.959 kb on - strandat 1844.750 kb on + strandat 1844.751 kb on - strandat 1844.751 kb on - strandat 1844.751 kb on - strandat 1844.751 kb on - strandat 1844.751 kb on - strandat 1844.771 kb on + strandat 1844.771 kb on + strandat 1844.771 kb on + strandat 1844.771 kb on + strandat 1844.771 kb on + strandat 1844.771 kb on + strandat 1844.771 kb on + strandat 1844.771 kb on + strandat 1844.771 kb on + strandat 1844.772 kb on - strandat 1844.772 kb on - strandat 1844.772 kb on - strandat 1844.772 kb on - strandat 1844.772 kb on - strandat 1844.772 kb on - strandat 1844.772 kb on - strandat 1844.772 kb on - strandat 1844.772 kb on - strandat 1844.773 kb on + strandat 1844.773 kb on + strandat 1844.773 kb on + strandat 1844.793 kb on + strandat 1844.793 kb on + strandat 1844.793 kb on + strandat 1844.793 kb on + strandat 1844.793 kb on + strandat 1844.794 kb on - strandat 1844.794 kb on - strandat 1844.794 kb on - strandat 1844.794 kb on - strandat 1844.794 kb on - strandat 1844.794 kb on - strandat 1844.794 kb on - strandat 1844.794 kb on - strandat 1844.794 kb on - strandat 1844.794 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with m-arsenite 0.078125 mM
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1,843,103 - +0.3
1,843,103 - +2.2
1,843,913 - +2.1
1,843,913 - +1.4
1,843,913 - +0.3
1,843,934 + -0.3
1,843,934 + +1.1
1,843,934 + +1.0
1,843,934 + +1.2
1,843,934 + +1.9
1,843,934 + +0.9
1,843,934 + +0.7
1,843,934 + +1.0
1,843,934 + +0.9
1,843,935 - +2.4
1,843,935 - +2.3
1,843,935 - +1.5
1,843,935 - +1.0
1,843,935 - +1.9
1,843,935 - +1.3
1,843,935 - +2.0
1,843,935 - +0.7
1,843,935 - +1.3
1,843,935 - +1.6
1,843,935 - +1.3
1,843,935 - +1.5
1,843,935 - +1.4
1,843,935 - +2.0
1,843,935 - +1.2
1,843,935 - +2.6
1,843,935 - +1.4
1,843,935 - +1.7
1,843,940 + +2.0
1,843,940 + +2.6
1,843,941 - +0.3
1,843,941 - +0.9
1,843,941 - +1.5
1,843,959 - +1.8
1,844,750 + +1.1
1,844,751 - +2.2
1,844,751 - +3.7
1,844,751 - +1.9
1,844,751 - +2.5
1,844,751 - +2.4
1,844,771 + +2.1
1,844,771 + +2.0
1,844,771 + +1.4
1,844,771 + +1.7
1,844,771 + +2.6
1,844,771 + +2.1
1,844,771 + +1.9
1,844,771 + +2.0
1,844,771 + +1.0
1,844,772 - +1.6
1,844,772 - +2.0
1,844,772 - +0.7
1,844,772 - +1.6
1,844,772 - +2.3
1,844,772 - +1.7
1,844,772 - +1.0
1,844,772 - +1.9
1,844,772 - +1.9
1,844,773 + +2.4
1,844,773 + +2.4
1,844,773 + +0.7
1,844,793 + -1.7
1,844,793 + +1.2
1,844,793 + +0.7
1,844,793 + +1.3
1,844,793 + +1.1
1,844,794 - -0.9
1,844,794 - +0.4
1,844,794 - +0.2
1,844,794 - -0.5
1,844,794 - +0.7
1,844,794 - -0.1
1,844,794 - -0.4
1,844,794 - -0.1
1,844,794 - -0.1
1,844,794 - +2.0

Or see this region's nucleotide sequence