Strain Fitness in Pantoea sp. MT58 around IAI47_05055

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_05050 and IAI47_05055 are separated by 37 nucleotidesIAI47_05055 and IAI47_05060 are separated by 105 nucleotides IAI47_05050: IAI47_05050 - cytoskeleton protein RodZ, at 1,065,903 to 1,066,922 _05050 IAI47_05055: IAI47_05055 - flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase, at 1,066,960 to 1,068,081 _05055 IAI47_05060: IAI47_05060 - histidine--tRNA ligase, at 1,068,187 to 1,069,461 _05060 Position (kb) 1066 1067 1068 1069Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1066.069 kb on + strand, within IAI47_05050at 1066.092 kb on + strand, within IAI47_05050at 1066.092 kb on + strand, within IAI47_05050at 1066.092 kb on + strand, within IAI47_05050at 1066.093 kb on - strand, within IAI47_05050at 1066.104 kb on + strand, within IAI47_05050at 1066.104 kb on + strand, within IAI47_05050at 1066.104 kb on + strand, within IAI47_05050at 1066.121 kb on + strand, within IAI47_05050at 1066.121 kb on + strand, within IAI47_05050at 1066.121 kb on + strand, within IAI47_05050at 1066.121 kb on + strand, within IAI47_05050at 1066.122 kb on - strand, within IAI47_05050at 1066.122 kb on - strand, within IAI47_05050at 1066.310 kb on + strand, within IAI47_05050at 1066.311 kb on - strand, within IAI47_05050at 1066.311 kb on - strand, within IAI47_05050at 1066.356 kb on - strand, within IAI47_05050at 1066.367 kb on + strand, within IAI47_05050at 1066.367 kb on + strand, within IAI47_05050at 1066.511 kb on + strand, within IAI47_05050at 1066.512 kb on - strand, within IAI47_05050at 1066.512 kb on - strand, within IAI47_05050at 1066.536 kb on - strand, within IAI47_05050at 1066.680 kb on - strand, within IAI47_05050at 1066.680 kb on - strand, within IAI47_05050at 1066.766 kb on + strand, within IAI47_05050at 1066.775 kb on + strand, within IAI47_05050at 1066.804 kb on - strand, within IAI47_05050at 1066.845 kb on + strandat 1066.867 kb on + strandat 1066.867 kb on + strandat 1066.920 kb on + strandat 1066.920 kb on + strandat 1066.920 kb on + strandat 1066.920 kb on + strandat 1066.921 kb on - strandat 1066.928 kb on + strandat 1068.054 kb on + strandat 1068.079 kb on + strandat 1068.079 kb on + strandat 1068.079 kb on + strandat 1068.141 kb on + strandat 1068.141 kb on + strandat 1068.141 kb on + strandat 1068.146 kb on + strandat 1068.146 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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1,066,069 + IAI47_05050 0.16 -0.2
1,066,092 + IAI47_05050 0.19 +1.0
1,066,092 + IAI47_05050 0.19 +1.4
1,066,092 + IAI47_05050 0.19 +0.5
1,066,093 - IAI47_05050 0.19 +0.3
1,066,104 + IAI47_05050 0.20 +1.9
1,066,104 + IAI47_05050 0.20 -0.1
1,066,104 + IAI47_05050 0.20 +0.9
1,066,121 + IAI47_05050 0.21 +0.9
1,066,121 + IAI47_05050 0.21 +0.3
1,066,121 + IAI47_05050 0.21 -0.4
1,066,121 + IAI47_05050 0.21 -0.4
1,066,122 - IAI47_05050 0.21 -0.8
1,066,122 - IAI47_05050 0.21 +1.2
1,066,310 + IAI47_05050 0.40 +0.4
1,066,311 - IAI47_05050 0.40 +1.1
1,066,311 - IAI47_05050 0.40 -0.7
1,066,356 - IAI47_05050 0.44 +1.8
1,066,367 + IAI47_05050 0.45 -2.5
1,066,367 + IAI47_05050 0.45 -0.8
1,066,511 + IAI47_05050 0.60 -0.1
1,066,512 - IAI47_05050 0.60 +1.0
1,066,512 - IAI47_05050 0.60 -0.5
1,066,536 - IAI47_05050 0.62 +0.9
1,066,680 - IAI47_05050 0.76 +0.6
1,066,680 - IAI47_05050 0.76 -1.0
1,066,766 + IAI47_05050 0.85 +1.3
1,066,775 + IAI47_05050 0.85 -2.7
1,066,804 - IAI47_05050 0.88 -2.6
1,066,845 + +1.3
1,066,867 + -0.3
1,066,867 + +0.6
1,066,920 + -1.4
1,066,920 + +1.8
1,066,920 + -0.7
1,066,920 + +0.8
1,066,921 - +0.0
1,066,928 + +1.8
1,068,054 + +2.0
1,068,079 + -1.6
1,068,079 + -2.7
1,068,079 + -0.0
1,068,141 + -1.3
1,068,141 + -3.1
1,068,141 + +0.6
1,068,146 + +1.0
1,068,146 + +0.6

Or see this region's nucleotide sequence