Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2741

Experiment: L-Lysine 50 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_2739 and Ga0059261_2740 are separated by 13 nucleotidesGa0059261_2740 and Ga0059261_2741 are separated by 92 nucleotidesGa0059261_2741 and Ga0059261_2742 overlap by 4 nucleotidesGa0059261_2742 and Ga0059261_2743 are separated by 29 nucleotides Ga0059261_2739: Ga0059261_2739 - heat-inducible transcription repressor HrcA, at 2,850,440 to 2,851,519 _2739 Ga0059261_2740: Ga0059261_2740 - hypothetical protein, at 2,851,533 to 2,852,108 _2740 Ga0059261_2741: Ga0059261_2741 - ribonuclease PH, at 2,852,201 to 2,852,917 _2741 Ga0059261_2742: Ga0059261_2742 - non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family, at 2,852,914 to 2,853,555 _2742 Ga0059261_2743: Ga0059261_2743 - hypothetical protein, at 2,853,585 to 2,853,746 _2743 Position (kb) 2852 2853Strain fitness (log2 ratio) -3 -2 -1 0 1at 2851.413 kb on + strandat 2851.413 kb on + strandat 2851.413 kb on + strandat 2851.488 kb on + strandat 2851.488 kb on + strandat 2851.488 kb on + strandat 2851.488 kb on + strandat 2851.488 kb on + strandat 2851.488 kb on + strandat 2851.488 kb on + strandat 2851.488 kb on + strandat 2851.489 kb on - strandat 2851.489 kb on - strandat 2851.489 kb on - strandat 2851.489 kb on - strandat 2851.489 kb on - strandat 2851.489 kb on - strandat 2851.496 kb on + strandat 2851.496 kb on + strandat 2851.496 kb on + strandat 2851.496 kb on + strandat 2851.497 kb on - strandat 2851.497 kb on - strandat 2851.497 kb on - strandat 2851.642 kb on + strand, within Ga0059261_2740at 2851.642 kb on + strandat 2851.643 kb on - strand, within Ga0059261_2740at 2851.643 kb on - strand, within Ga0059261_2740at 2851.677 kb on + strand, within Ga0059261_2740at 2851.677 kb on + strand, within Ga0059261_2740at 2851.678 kb on - strand, within Ga0059261_2740at 2851.678 kb on - strand, within Ga0059261_2740at 2851.678 kb on - strand, within Ga0059261_2740at 2851.678 kb on - strand, within Ga0059261_2740at 2851.735 kb on + strand, within Ga0059261_2740at 2851.735 kb on + strand, within Ga0059261_2740at 2851.894 kb on + strand, within Ga0059261_2740at 2851.894 kb on + strand, within Ga0059261_2740at 2851.894 kb on + strand, within Ga0059261_2740at 2851.894 kb on + strand, within Ga0059261_2740at 2851.931 kb on - strand, within Ga0059261_2740at 2851.931 kb on - strand, within Ga0059261_2740at 2852.060 kb on + strandat 2852.060 kb on + strandat 2852.061 kb on - strandat 2852.089 kb on - strandat 2852.099 kb on + strandat 2852.163 kb on + strandat 2852.163 kb on + strandat 2852.164 kb on - strandat 2852.164 kb on - strandat 2852.164 kb on - strandat 2852.164 kb on - strandat 2852.393 kb on - strandat 2852.700 kb on - strandat 2852.985 kb on + strand, within Ga0059261_2742at 2852.985 kb on + strand, within Ga0059261_2742at 2853.433 kb on + strand, within Ga0059261_2742at 2853.433 kb on + strand, within Ga0059261_2742at 2853.434 kb on - strand, within Ga0059261_2742at 2853.628 kb on + strand, within Ga0059261_2743at 2853.721 kb on + strand, within Ga0059261_2743at 2853.721 kb on + strand, within Ga0059261_2743at 2853.722 kb on - strand, within Ga0059261_2743at 2853.722 kb on - strand, within Ga0059261_2743at 2853.722 kb on - strand, within Ga0059261_2743at 2853.722 kb on - strand, within Ga0059261_2743at 2853.832 kb on - strandat 2853.832 kb on - strandat 2853.837 kb on + strandat 2853.837 kb on + strandat 2853.838 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine 50 mM
remove
2,851,413 + -0.4
2,851,413 + -0.4
2,851,413 + -0.2
2,851,488 + +0.0
2,851,488 + +0.5
2,851,488 + +0.7
2,851,488 + +0.2
2,851,488 + -3.6
2,851,488 + -0.2
2,851,488 + +0.2
2,851,488 + -0.2
2,851,489 - +1.2
2,851,489 - +0.2
2,851,489 - -0.0
2,851,489 - -0.2
2,851,489 - -0.6
2,851,489 - +1.3
2,851,496 + -0.1
2,851,496 + +0.5
2,851,496 + +0.2
2,851,496 + -0.8
2,851,497 - -1.6
2,851,497 - -0.5
2,851,497 - +0.6
2,851,642 + Ga0059261_2740 0.19 +0.2
2,851,642 + +0.7
2,851,643 - Ga0059261_2740 0.19 +0.1
2,851,643 - Ga0059261_2740 0.19 -0.8
2,851,677 + Ga0059261_2740 0.25 -0.8
2,851,677 + Ga0059261_2740 0.25 -0.4
2,851,678 - Ga0059261_2740 0.25 -0.5
2,851,678 - Ga0059261_2740 0.25 -0.2
2,851,678 - Ga0059261_2740 0.25 -0.1
2,851,678 - Ga0059261_2740 0.25 -1.3
2,851,735 + Ga0059261_2740 0.35 -0.4
2,851,735 + Ga0059261_2740 0.35 +0.2
2,851,894 + Ga0059261_2740 0.63 +0.9
2,851,894 + Ga0059261_2740 0.63 -0.1
2,851,894 + Ga0059261_2740 0.63 +0.7
2,851,894 + Ga0059261_2740 0.63 +0.4
2,851,931 - Ga0059261_2740 0.69 -0.1
2,851,931 - Ga0059261_2740 0.69 -0.3
2,852,060 + -0.3
2,852,060 + -1.1
2,852,061 - -0.1
2,852,089 - -0.7
2,852,099 + +0.1
2,852,163 + +0.1
2,852,163 + -0.3
2,852,164 - -0.0
2,852,164 - -0.7
2,852,164 - -1.4
2,852,164 - +0.7
2,852,393 - -0.8
2,852,700 - -0.3
2,852,985 + Ga0059261_2742 0.11 -0.8
2,852,985 + Ga0059261_2742 0.11 -0.6
2,853,433 + Ga0059261_2742 0.81 +0.4
2,853,433 + Ga0059261_2742 0.81 +0.1
2,853,434 - Ga0059261_2742 0.81 -0.7
2,853,628 + Ga0059261_2743 0.27 +0.3
2,853,721 + Ga0059261_2743 0.84 -0.1
2,853,721 + Ga0059261_2743 0.84 +0.0
2,853,722 - Ga0059261_2743 0.85 +0.2
2,853,722 - Ga0059261_2743 0.85 +1.0
2,853,722 - Ga0059261_2743 0.85 +0.7
2,853,722 - Ga0059261_2743 0.85 -0.7
2,853,832 - -1.3
2,853,832 - -0.1
2,853,837 + -0.5
2,853,837 + +0.3
2,853,838 - +0.4

Or see this region's nucleotide sequence