Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0122

Experiment: L-Lysine 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0120 and Ga0059261_0121 overlap by 17 nucleotidesGa0059261_0121 and Ga0059261_0122 are separated by 28 nucleotidesGa0059261_0122 and Ga0059261_0123 overlap by 4 nucleotidesGa0059261_0123 and Ga0059261_0124 overlap by 4 nucleotides Ga0059261_0120: Ga0059261_0120 - lytic murein transglycosylase, at 114,126 to 115,178 _0120 Ga0059261_0121: Ga0059261_0121 - Sporulation related domain, at 115,162 to 116,040 _0121 Ga0059261_0122: Ga0059261_0122 - D-alanyl-D-alanine carboxypeptidase, at 116,069 to 117,256 _0122 Ga0059261_0123: Ga0059261_0123 - dTMP kinase, at 117,253 to 117,876 _0123 Ga0059261_0124: Ga0059261_0124 - DNA polymerase III, delta subunit, at 117,873 to 118,856 _0124 Position (kb) 116 117 118Strain fitness (log2 ratio) -2 -1 0 1at 115.080 kb on + strandat 115.080 kb on + strandat 115.098 kb on + strandat 115.098 kb on + strandat 115.116 kb on + strandat 115.116 kb on + strandat 115.118 kb on + strandat 115.118 kb on + strandat 115.118 kb on + strandat 115.134 kb on + strandat 115.134 kb on + strandat 115.134 kb on + strandat 115.430 kb on + strand, within Ga0059261_0121at 115.455 kb on + strand, within Ga0059261_0121at 115.536 kb on + strand, within Ga0059261_0121at 116.008 kb on + strandat 116.008 kb on + strandat 116.008 kb on + strandat 116.603 kb on + strand, within Ga0059261_0122

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine 50 mM
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115,080 + -1.9
115,080 + -0.3
115,098 + +1.1
115,098 + -0.2
115,116 + +0.2
115,116 + +0.7
115,118 + -1.3
115,118 + +0.7
115,118 + -0.9
115,134 + -1.6
115,134 + -1.1
115,134 + -0.9
115,430 + Ga0059261_0121 0.30 -2.1
115,455 + Ga0059261_0121 0.33 +1.0
115,536 + Ga0059261_0121 0.43 -1.4
116,008 + +0.8
116,008 + -0.5
116,008 + -0.6
116,603 + Ga0059261_0122 0.45 -0.3

Or see this region's nucleotide sequence