Strain Fitness in Rahnella sp. WP5 around EX31_RS20900

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS20895 and EX31_RS20900 are separated by 561 nucleotidesEX31_RS20900 and EX31_RS25010 are separated by 138 nucleotidesEX31_RS25010 and EX31_RS20910 are separated by 93 nucleotides EX31_RS20895: EX31_RS20895 - hypothetical protein, at 824,558 to 825,211 _RS20895 EX31_RS20900: EX31_RS20900 - MobA/MobL family protein, at 825,773 to 827,191 _RS20900 EX31_RS25010: EX31_RS25010 - hypothetical protein, at 827,330 to 828,097 _RS25010 EX31_RS20910: EX31_RS20910 - hypothetical protein, at 828,191 to 828,847 _RS20910 Position (kb) 825 826 827 828Strain fitness (log2 ratio) -2 -1 0 1 2 3at 824.903 kb on + strand, within EX31_RS20895at 824.903 kb on + strand, within EX31_RS20895at 824.904 kb on - strand, within EX31_RS20895at 825.102 kb on - strand, within EX31_RS20895at 825.226 kb on - strandat 825.286 kb on - strandat 825.289 kb on + strandat 825.411 kb on + strandat 825.415 kb on - strandat 825.485 kb on - strandat 825.485 kb on - strandat 825.504 kb on - strandat 825.516 kb on + strandat 825.590 kb on - strandat 825.635 kb on + strandat 825.637 kb on + strandat 825.637 kb on + strandat 825.637 kb on + strandat 825.638 kb on - strandat 825.638 kb on - strandat 825.710 kb on + strandat 825.711 kb on - strandat 825.714 kb on + strandat 825.715 kb on - strandat 825.715 kb on - strandat 825.737 kb on - strandat 825.747 kb on + strandat 825.846 kb on - strandat 825.865 kb on - strandat 825.890 kb on + strandat 825.931 kb on - strand, within EX31_RS20900at 825.934 kb on - strand, within EX31_RS20900at 825.934 kb on - strand, within EX31_RS20900at 825.956 kb on + strand, within EX31_RS20900at 825.956 kb on + strand, within EX31_RS20900at 825.956 kb on + strand, within EX31_RS20900at 825.957 kb on - strand, within EX31_RS20900at 825.958 kb on + strand, within EX31_RS20900at 825.959 kb on - strand, within EX31_RS20900at 826.043 kb on - strand, within EX31_RS20900at 826.044 kb on + strand, within EX31_RS20900at 826.044 kb on + strand, within EX31_RS20900at 826.044 kb on + strand, within EX31_RS20900at 826.044 kb on + strand, within EX31_RS20900at 826.044 kb on + strand, within EX31_RS20900at 826.044 kb on + strand, within EX31_RS20900at 826.045 kb on - strand, within EX31_RS20900at 826.045 kb on - strand, within EX31_RS20900at 826.045 kb on - strand, within EX31_RS20900at 826.045 kb on - strand, within EX31_RS20900at 826.045 kb on - strand, within EX31_RS20900at 826.049 kb on - strand, within EX31_RS20900at 826.049 kb on - strand, within EX31_RS20900at 826.298 kb on + strand, within EX31_RS20900at 826.304 kb on - strand, within EX31_RS20900at 826.304 kb on - strand, within EX31_RS20900at 826.318 kb on + strand, within EX31_RS20900at 826.327 kb on + strand, within EX31_RS20900at 826.327 kb on + strand, within EX31_RS20900at 826.327 kb on + strand, within EX31_RS20900at 826.328 kb on - strand, within EX31_RS20900at 826.328 kb on - strand, within EX31_RS20900at 826.328 kb on - strand, within EX31_RS20900at 826.328 kb on - strand, within EX31_RS20900at 826.342 kb on + strand, within EX31_RS20900at 826.382 kb on - strand, within EX31_RS20900at 826.384 kb on + strand, within EX31_RS20900at 826.384 kb on + strand, within EX31_RS20900at 826.384 kb on + strand, within EX31_RS20900at 826.384 kb on + strand, within EX31_RS20900at 826.384 kb on + strand, within EX31_RS20900at 826.384 kb on + strand, within EX31_RS20900at 826.385 kb on - strand, within EX31_RS20900at 826.385 kb on - strand, within EX31_RS20900at 826.385 kb on - strand, within EX31_RS20900at 826.385 kb on - strand, within EX31_RS20900at 826.385 kb on - strand, within EX31_RS20900at 826.385 kb on - strand, within EX31_RS20900at 826.496 kb on - strand, within EX31_RS20900at 826.553 kb on + strand, within EX31_RS20900at 826.553 kb on + strand, within EX31_RS20900at 826.553 kb on + strand, within EX31_RS20900at 826.553 kb on + strand, within EX31_RS20900at 826.553 kb on + strand, within EX31_RS20900at 826.553 kb on + strand, within EX31_RS20900at 826.553 kb on + strand, within EX31_RS20900at 826.553 kb on + strand, within EX31_RS20900at 826.553 kb on + strand, within EX31_RS20900at 826.553 kb on + strand, within EX31_RS20900at 826.553 kb on + strand, within EX31_RS20900at 826.553 kb on + strand, within EX31_RS20900at 826.554 kb on - strand, within EX31_RS20900at 826.554 kb on - strand, within EX31_RS20900at 826.554 kb on - strand, within EX31_RS20900at 826.554 kb on - strand, within EX31_RS20900at 826.554 kb on - strand, within EX31_RS20900at 826.554 kb on - strand, within EX31_RS20900at 826.554 kb on - strand, within EX31_RS20900at 826.554 kb on - strand, within EX31_RS20900at 826.554 kb on - strand, within EX31_RS20900at 826.554 kb on - strand, within EX31_RS20900at 826.554 kb on - strand, within EX31_RS20900at 826.554 kb on - strand, within EX31_RS20900at 826.554 kb on - strand, within EX31_RS20900at 826.597 kb on + strand, within EX31_RS20900at 826.598 kb on - strand, within EX31_RS20900at 826.598 kb on - strand, within EX31_RS20900at 826.619 kb on - strand, within EX31_RS20900at 826.619 kb on - strand, within EX31_RS20900at 826.619 kb on - strand, within EX31_RS20900at 826.619 kb on - strand, within EX31_RS20900at 826.619 kb on - strand, within EX31_RS20900at 826.741 kb on + strand, within EX31_RS20900at 826.741 kb on + strand, within EX31_RS20900at 826.741 kb on + strand, within EX31_RS20900at 826.742 kb on - strand, within EX31_RS20900at 826.742 kb on - strand, within EX31_RS20900at 826.802 kb on - strand, within EX31_RS20900at 826.808 kb on - strand, within EX31_RS20900at 826.808 kb on - strand, within EX31_RS20900at 826.808 kb on - strand, within EX31_RS20900at 826.822 kb on + strand, within EX31_RS20900at 826.874 kb on + strand, within EX31_RS20900at 826.874 kb on + strand, within EX31_RS20900at 826.874 kb on + strand, within EX31_RS20900at 826.874 kb on + strand, within EX31_RS20900at 826.875 kb on - strand, within EX31_RS20900at 826.875 kb on - strand, within EX31_RS20900at 826.875 kb on - strand, within EX31_RS20900at 826.875 kb on - strand, within EX31_RS20900at 826.875 kb on - strand, within EX31_RS20900at 826.875 kb on - strand, within EX31_RS20900at 826.875 kb on - strand, within EX31_RS20900at 826.876 kb on + strand, within EX31_RS20900at 826.876 kb on + strand, within EX31_RS20900at 826.876 kb on + strand, within EX31_RS20900at 826.876 kb on + strand, within EX31_RS20900at 826.876 kb on + strand, within EX31_RS20900at 826.876 kb on + strand, within EX31_RS20900at 826.876 kb on + strand, within EX31_RS20900at 826.876 kb on + strand, within EX31_RS20900at 826.876 kb on + strand, within EX31_RS20900at 826.877 kb on - strand, within EX31_RS20900at 826.877 kb on - strand, within EX31_RS20900at 826.877 kb on - strand, within EX31_RS20900at 826.877 kb on - strand, within EX31_RS20900at 826.877 kb on - strand, within EX31_RS20900at 826.877 kb on - strand, within EX31_RS20900at 826.877 kb on - strand, within EX31_RS20900at 826.877 kb on - strand, within EX31_RS20900at 826.877 kb on - strand, within EX31_RS20900at 826.877 kb on - strand, within EX31_RS20900at 826.877 kb on - strand, within EX31_RS20900at 826.877 kb on - strand, within EX31_RS20900at 826.877 kb on - strand, within EX31_RS20900at 826.877 kb on - strand, within EX31_RS20900at 826.877 kb on - strand, within EX31_RS20900at 826.877 kb on - strand, within EX31_RS20900at 826.877 kb on - strand, within EX31_RS20900at 826.878 kb on + strand, within EX31_RS20900at 826.878 kb on + strand, within EX31_RS20900at 826.878 kb on + strand, within EX31_RS20900at 826.878 kb on + strand, within EX31_RS20900at 826.878 kb on + strand, within EX31_RS20900at 826.878 kb on + strand, within EX31_RS20900at 826.878 kb on + strand, within EX31_RS20900at 826.878 kb on + strand, within EX31_RS20900at 826.878 kb on + strand, within EX31_RS20900at 826.879 kb on - strand, within EX31_RS20900at 826.879 kb on - strand, within EX31_RS20900at 826.879 kb on - strand, within EX31_RS20900at 826.879 kb on - strand, within EX31_RS20900at 826.879 kb on - strand, within EX31_RS20900at 826.879 kb on - strand, within EX31_RS20900at 826.879 kb on - strand, within EX31_RS20900at 826.948 kb on + strand, within EX31_RS20900at 826.949 kb on - strand, within EX31_RS20900at 826.949 kb on - strand, within EX31_RS20900at 826.949 kb on - strand, within EX31_RS20900at 826.949 kb on - strand, within EX31_RS20900at 826.949 kb on - strand, within EX31_RS20900at 826.961 kb on + strand, within EX31_RS20900at 826.961 kb on + strand, within EX31_RS20900at 826.961 kb on + strand, within EX31_RS20900at 826.962 kb on - strand, within EX31_RS20900at 826.988 kb on + strand, within EX31_RS20900at 826.988 kb on + strand, within EX31_RS20900at 826.988 kb on + strand, within EX31_RS20900at 826.989 kb on - strand, within EX31_RS20900at 826.989 kb on - strand, within EX31_RS20900at 826.989 kb on - strand, within EX31_RS20900at 826.989 kb on - strand, within EX31_RS20900at 826.989 kb on - strand, within EX31_RS20900at 826.989 kb on - strand, within EX31_RS20900at 826.989 kb on - strand, within EX31_RS20900at 826.989 kb on - strand, within EX31_RS20900at 826.989 kb on - strand, within EX31_RS20900at 826.989 kb on - strand, within EX31_RS20900at 827.039 kb on + strand, within EX31_RS20900at 827.039 kb on + strand, within EX31_RS20900at 827.039 kb on + strand, within EX31_RS20900at 827.039 kb on + strand, within EX31_RS20900at 827.039 kb on + strand, within EX31_RS20900at 827.039 kb on + strand, within EX31_RS20900at 827.040 kb on - strand, within EX31_RS20900at 827.040 kb on - strand, within EX31_RS20900at 827.040 kb on - strand, within EX31_RS20900at 827.040 kb on - strand, within EX31_RS20900at 827.040 kb on - strand, within EX31_RS20900at 827.041 kb on + strand, within EX31_RS20900at 827.041 kb on + strand, within EX31_RS20900at 827.041 kb on + strand, within EX31_RS20900at 827.042 kb on - strand, within EX31_RS20900at 827.042 kb on - strand, within EX31_RS20900at 827.248 kb on - strandat 827.252 kb on - strandat 827.403 kb on + strandat 827.403 kb on + strandat 827.448 kb on + strand, within EX31_RS25010at 827.508 kb on + strand, within EX31_RS25010at 827.533 kb on + strand, within EX31_RS25010at 827.611 kb on + strand, within EX31_RS25010at 827.611 kb on + strand, within EX31_RS25010at 827.612 kb on - strand, within EX31_RS25010at 827.724 kb on - strand, within EX31_RS25010at 827.737 kb on - strand, within EX31_RS25010at 827.906 kb on - strand, within EX31_RS25010at 828.081 kb on + strandat 828.156 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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824,903 + EX31_RS20895 0.53 +0.5
824,903 + EX31_RS20895 0.53 +0.1
824,904 - EX31_RS20895 0.53 +0.5
825,102 - EX31_RS20895 0.83 -0.8
825,226 - +0.9
825,286 - +2.2
825,289 + -0.1
825,411 + +1.4
825,415 - +3.0
825,485 - -2.5
825,485 - +0.1
825,504 - -2.1
825,516 + +1.3
825,590 - +0.1
825,635 + +0.6
825,637 + +0.2
825,637 + -1.1
825,637 + +0.2
825,638 - +0.4
825,638 - -0.3
825,710 + +0.9
825,711 - -0.9
825,714 + -0.4
825,715 - +1.3
825,715 - +0.4
825,737 - +1.2
825,747 + +1.1
825,846 - -0.2
825,865 - +0.3
825,890 + -2.0
825,931 - EX31_RS20900 0.11 +0.1
825,934 - EX31_RS20900 0.11 +0.1
825,934 - EX31_RS20900 0.11 +0.8
825,956 + EX31_RS20900 0.13 -0.1
825,956 + EX31_RS20900 0.13 -1.1
825,956 + EX31_RS20900 0.13 +0.3
825,957 - EX31_RS20900 0.13 +0.5
825,958 + EX31_RS20900 0.13 -0.5
825,959 - EX31_RS20900 0.13 +0.9
826,043 - EX31_RS20900 0.19 -0.5
826,044 + EX31_RS20900 0.19 -1.1
826,044 + EX31_RS20900 0.19 +0.5
826,044 + EX31_RS20900 0.19 -1.3
826,044 + EX31_RS20900 0.19 -0.1
826,044 + EX31_RS20900 0.19 +0.9
826,044 + EX31_RS20900 0.19 +0.6
826,045 - EX31_RS20900 0.19 +0.1
826,045 - EX31_RS20900 0.19 +0.4
826,045 - EX31_RS20900 0.19 +0.3
826,045 - EX31_RS20900 0.19 +0.9
826,045 - EX31_RS20900 0.19 +0.2
826,049 - EX31_RS20900 0.19 +0.9
826,049 - EX31_RS20900 0.19 -0.1
826,298 + EX31_RS20900 0.37 +1.0
826,304 - EX31_RS20900 0.37 -1.0
826,304 - EX31_RS20900 0.37 +0.9
826,318 + EX31_RS20900 0.38 -0.5
826,327 + EX31_RS20900 0.39 -0.6
826,327 + EX31_RS20900 0.39 +1.8
826,327 + EX31_RS20900 0.39 +0.3
826,328 - EX31_RS20900 0.39 -0.2
826,328 - EX31_RS20900 0.39 +0.9
826,328 - EX31_RS20900 0.39 -1.1
826,328 - EX31_RS20900 0.39 -0.0
826,342 + EX31_RS20900 0.40 +2.5
826,382 - EX31_RS20900 0.43 +0.3
826,384 + EX31_RS20900 0.43 +0.8
826,384 + EX31_RS20900 0.43 +0.0
826,384 + EX31_RS20900 0.43 +0.3
826,384 + EX31_RS20900 0.43 +0.3
826,384 + EX31_RS20900 0.43 -0.8
826,384 + EX31_RS20900 0.43 +1.5
826,385 - EX31_RS20900 0.43 -0.2
826,385 - EX31_RS20900 0.43 +0.3
826,385 - EX31_RS20900 0.43 -0.7
826,385 - EX31_RS20900 0.43 +0.7
826,385 - EX31_RS20900 0.43 +1.2
826,385 - EX31_RS20900 0.43 +0.6
826,496 - EX31_RS20900 0.51 +1.0
826,553 + EX31_RS20900 0.55 +1.3
826,553 + EX31_RS20900 0.55 +0.0
826,553 + EX31_RS20900 0.55 +0.9
826,553 + EX31_RS20900 0.55 +2.8
826,553 + EX31_RS20900 0.55 +0.8
826,553 + EX31_RS20900 0.55 +1.2
826,553 + EX31_RS20900 0.55 +0.2
826,553 + EX31_RS20900 0.55 +2.7
826,553 + EX31_RS20900 0.55 -0.8
826,553 + EX31_RS20900 0.55 -1.4
826,553 + EX31_RS20900 0.55 +0.6
826,553 + EX31_RS20900 0.55 -0.3
826,554 - EX31_RS20900 0.55 +1.3
826,554 - EX31_RS20900 0.55 -1.9
826,554 - EX31_RS20900 0.55 +1.1
826,554 - EX31_RS20900 0.55 +1.5
826,554 - EX31_RS20900 0.55 -0.7
826,554 - EX31_RS20900 0.55 -0.7
826,554 - EX31_RS20900 0.55 +2.5
826,554 - EX31_RS20900 0.55 +1.3
826,554 - EX31_RS20900 0.55 +0.6
826,554 - EX31_RS20900 0.55 -0.1
826,554 - EX31_RS20900 0.55 +2.0
826,554 - EX31_RS20900 0.55 +0.9
826,554 - EX31_RS20900 0.55 +0.2
826,597 + EX31_RS20900 0.58 +0.9
826,598 - EX31_RS20900 0.58 +0.9
826,598 - EX31_RS20900 0.58 -1.4
826,619 - EX31_RS20900 0.60 +0.3
826,619 - EX31_RS20900 0.60 +0.3
826,619 - EX31_RS20900 0.60 +0.2
826,619 - EX31_RS20900 0.60 -0.6
826,619 - EX31_RS20900 0.60 +0.2
826,741 + EX31_RS20900 0.68 +1.4
826,741 + EX31_RS20900 0.68 +1.3
826,741 + EX31_RS20900 0.68 -1.1
826,742 - EX31_RS20900 0.68 +1.6
826,742 - EX31_RS20900 0.68 +0.4
826,802 - EX31_RS20900 0.73 +0.2
826,808 - EX31_RS20900 0.73 -1.1
826,808 - EX31_RS20900 0.73 +0.3
826,808 - EX31_RS20900 0.73 +0.6
826,822 + EX31_RS20900 0.74 +1.7
826,874 + EX31_RS20900 0.78 -1.5
826,874 + EX31_RS20900 0.78 +1.1
826,874 + EX31_RS20900 0.78 +0.9
826,874 + EX31_RS20900 0.78 +0.5
826,875 - EX31_RS20900 0.78 -0.5
826,875 - EX31_RS20900 0.78 -0.3
826,875 - EX31_RS20900 0.78 +1.0
826,875 - EX31_RS20900 0.78 +0.2
826,875 - EX31_RS20900 0.78 -0.8
826,875 - EX31_RS20900 0.78 -0.5
826,875 - EX31_RS20900 0.78 +0.7
826,876 + EX31_RS20900 0.78 +1.0
826,876 + EX31_RS20900 0.78 -0.7
826,876 + EX31_RS20900 0.78 +1.1
826,876 + EX31_RS20900 0.78 -0.1
826,876 + EX31_RS20900 0.78 -2.5
826,876 + EX31_RS20900 0.78 +0.6
826,876 + EX31_RS20900 0.78 -0.1
826,876 + EX31_RS20900 0.78 +0.6
826,876 + EX31_RS20900 0.78 -1.0
826,877 - EX31_RS20900 0.78 +0.3
826,877 - EX31_RS20900 0.78 +0.9
826,877 - EX31_RS20900 0.78 -0.1
826,877 - EX31_RS20900 0.78 +0.2
826,877 - EX31_RS20900 0.78 +0.6
826,877 - EX31_RS20900 0.78 -0.2
826,877 - EX31_RS20900 0.78 +0.3
826,877 - EX31_RS20900 0.78 +0.2
826,877 - EX31_RS20900 0.78 +0.9
826,877 - EX31_RS20900 0.78 +2.2
826,877 - EX31_RS20900 0.78 -1.1
826,877 - EX31_RS20900 0.78 -0.5
826,877 - EX31_RS20900 0.78 -1.3
826,877 - EX31_RS20900 0.78 +0.4
826,877 - EX31_RS20900 0.78 +0.4
826,877 - EX31_RS20900 0.78 -0.8
826,877 - EX31_RS20900 0.78 -0.5
826,878 + EX31_RS20900 0.78 +0.3
826,878 + EX31_RS20900 0.78 -1.1
826,878 + EX31_RS20900 0.78 +2.1
826,878 + EX31_RS20900 0.78 +1.9
826,878 + EX31_RS20900 0.78 +1.1
826,878 + EX31_RS20900 0.78 +0.9
826,878 + EX31_RS20900 0.78 -0.0
826,878 + EX31_RS20900 0.78 +0.8
826,878 + EX31_RS20900 0.78 +0.7
826,879 - EX31_RS20900 0.78 +0.5
826,879 - EX31_RS20900 0.78 -0.3
826,879 - EX31_RS20900 0.78 +0.7
826,879 - EX31_RS20900 0.78 -1.1
826,879 - EX31_RS20900 0.78 -0.9
826,879 - EX31_RS20900 0.78 +2.3
826,879 - EX31_RS20900 0.78 +0.3
826,948 + EX31_RS20900 0.83 +1.3
826,949 - EX31_RS20900 0.83 +0.1
826,949 - EX31_RS20900 0.83 -1.8
826,949 - EX31_RS20900 0.83 +0.9
826,949 - EX31_RS20900 0.83 -0.4
826,949 - EX31_RS20900 0.83 -0.0
826,961 + EX31_RS20900 0.84 -0.2
826,961 + EX31_RS20900 0.84 +0.9
826,961 + EX31_RS20900 0.84 -0.4
826,962 - EX31_RS20900 0.84 -0.7
826,988 + EX31_RS20900 0.86 +0.1
826,988 + EX31_RS20900 0.86 +0.9
826,988 + EX31_RS20900 0.86 +0.6
826,989 - EX31_RS20900 0.86 -0.3
826,989 - EX31_RS20900 0.86 +0.2
826,989 - EX31_RS20900 0.86 -0.7
826,989 - EX31_RS20900 0.86 -1.1
826,989 - EX31_RS20900 0.86 -0.1
826,989 - EX31_RS20900 0.86 +0.6
826,989 - EX31_RS20900 0.86 +0.2
826,989 - EX31_RS20900 0.86 -1.1
826,989 - EX31_RS20900 0.86 +1.6
826,989 - EX31_RS20900 0.86 +1.6
827,039 + EX31_RS20900 0.89 +1.9
827,039 + EX31_RS20900 0.89 +0.9
827,039 + EX31_RS20900 0.89 -0.1
827,039 + EX31_RS20900 0.89 -0.1
827,039 + EX31_RS20900 0.89 +0.6
827,039 + EX31_RS20900 0.89 +0.1
827,040 - EX31_RS20900 0.89 -1.0
827,040 - EX31_RS20900 0.89 +0.0
827,040 - EX31_RS20900 0.89 +0.4
827,040 - EX31_RS20900 0.89 +0.1
827,040 - EX31_RS20900 0.89 +0.9
827,041 + EX31_RS20900 0.89 +0.9
827,041 + EX31_RS20900 0.89 -0.8
827,041 + EX31_RS20900 0.89 -0.1
827,042 - EX31_RS20900 0.89 +0.6
827,042 - EX31_RS20900 0.89 -0.8
827,248 - +2.1
827,252 - -0.3
827,403 + -0.5
827,403 + -0.2
827,448 + EX31_RS25010 0.15 -0.2
827,508 + EX31_RS25010 0.23 +1.6
827,533 + EX31_RS25010 0.26 -0.8
827,611 + EX31_RS25010 0.37 +0.0
827,611 + EX31_RS25010 0.37 +0.6
827,612 - EX31_RS25010 0.37 -1.9
827,724 - EX31_RS25010 0.51 -1.1
827,737 - EX31_RS25010 0.53 +0.5
827,906 - EX31_RS25010 0.75 -0.5
828,081 + +0.5
828,156 + -1.4

Or see this region's nucleotide sequence