Strain Fitness in Rahnella sp. WP5 around EX31_RS18420

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS18410 and EX31_RS25005 are separated by 165 nucleotidesEX31_RS25005 and EX31_RS18420 overlap by 17 nucleotidesEX31_RS18420 and EX31_RS18425 are separated by 306 nucleotides EX31_RS18410: EX31_RS18410 - hypothetical protein, at 255,196 to 256,554 _RS18410 EX31_RS25005: EX31_RS25005 - hypothetical protein, at 256,720 to 256,911 _RS25005 EX31_RS18420: EX31_RS18420 - hypothetical protein, at 256,895 to 257,722 _RS18420 EX31_RS18425: EX31_RS18425 - replication endonuclease, at 258,029 to 260,056 _RS18425 Position (kb) 256 257 258Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 255.921 kb on + strand, within EX31_RS18410at 255.921 kb on + strand, within EX31_RS18410at 255.921 kb on + strand, within EX31_RS18410at 255.921 kb on + strand, within EX31_RS18410at 255.944 kb on + strand, within EX31_RS18410at 255.991 kb on + strand, within EX31_RS18410at 255.991 kb on + strand, within EX31_RS18410at 255.991 kb on + strand, within EX31_RS18410at 255.991 kb on + strand, within EX31_RS18410at 255.991 kb on + strand, within EX31_RS18410at 255.991 kb on + strand, within EX31_RS18410at 255.991 kb on + strand, within EX31_RS18410at 255.992 kb on - strand, within EX31_RS18410at 255.992 kb on - strand, within EX31_RS18410at 256.007 kb on + strand, within EX31_RS18410at 256.060 kb on - strand, within EX31_RS18410at 256.062 kb on + strand, within EX31_RS18410at 256.063 kb on - strand, within EX31_RS18410at 256.065 kb on + strand, within EX31_RS18410at 256.065 kb on + strand, within EX31_RS18410at 256.065 kb on + strand, within EX31_RS18410at 256.065 kb on + strand, within EX31_RS18410at 256.066 kb on - strand, within EX31_RS18410at 256.066 kb on - strand, within EX31_RS18410at 256.067 kb on + strand, within EX31_RS18410at 256.102 kb on + strand, within EX31_RS18410at 256.103 kb on - strand, within EX31_RS18410at 256.103 kb on - strand, within EX31_RS18410at 256.144 kb on - strand, within EX31_RS18410at 256.176 kb on + strand, within EX31_RS18410at 256.176 kb on + strand, within EX31_RS18410at 256.177 kb on - strand, within EX31_RS18410at 256.179 kb on + strand, within EX31_RS18410at 256.206 kb on + strand, within EX31_RS18410at 256.206 kb on + strand, within EX31_RS18410at 256.206 kb on + strand, within EX31_RS18410at 256.206 kb on + strand, within EX31_RS18410at 256.206 kb on + strand, within EX31_RS18410at 256.206 kb on + strand, within EX31_RS18410at 256.206 kb on + strand, within EX31_RS18410at 256.206 kb on + strand, within EX31_RS18410at 256.206 kb on + strand, within EX31_RS18410at 256.206 kb on + strand, within EX31_RS18410at 256.206 kb on + strand, within EX31_RS18410at 256.206 kb on + strand, within EX31_RS18410at 256.206 kb on + strand, within EX31_RS18410at 256.207 kb on - strand, within EX31_RS18410at 256.207 kb on - strand, within EX31_RS18410at 256.287 kb on + strand, within EX31_RS18410at 256.287 kb on + strand, within EX31_RS18410at 256.288 kb on - strand, within EX31_RS18410at 256.288 kb on - strand, within EX31_RS18410at 256.292 kb on + strand, within EX31_RS18410at 256.292 kb on + strand, within EX31_RS18410at 256.292 kb on + strand, within EX31_RS18410at 256.293 kb on - strand, within EX31_RS18410at 256.293 kb on - strand, within EX31_RS18410at 256.302 kb on + strand, within EX31_RS18410at 256.311 kb on - strand, within EX31_RS18410at 256.311 kb on - strand, within EX31_RS18410at 256.338 kb on + strand, within EX31_RS18410at 256.338 kb on + strand, within EX31_RS18410at 256.350 kb on + strand, within EX31_RS18410at 256.350 kb on + strand, within EX31_RS18410at 256.350 kb on + strand, within EX31_RS18410at 256.350 kb on + strand, within EX31_RS18410at 256.350 kb on + strand, within EX31_RS18410at 256.350 kb on + strand, within EX31_RS18410at 256.351 kb on - strand, within EX31_RS18410at 256.357 kb on - strand, within EX31_RS18410at 256.375 kb on + strand, within EX31_RS18410at 256.375 kb on + strand, within EX31_RS18410at 256.375 kb on + strand, within EX31_RS18410at 256.375 kb on + strand, within EX31_RS18410at 256.375 kb on + strand, within EX31_RS18410at 256.376 kb on - strand, within EX31_RS18410at 256.376 kb on - strand, within EX31_RS18410at 256.376 kb on - strand, within EX31_RS18410at 256.376 kb on - strand, within EX31_RS18410at 256.377 kb on + strand, within EX31_RS18410at 256.377 kb on + strand, within EX31_RS18410at 256.377 kb on + strand, within EX31_RS18410at 256.377 kb on + strand, within EX31_RS18410at 256.378 kb on - strand, within EX31_RS18410at 256.382 kb on + strand, within EX31_RS18410at 256.382 kb on + strand, within EX31_RS18410at 256.422 kb on + strandat 256.422 kb on + strandat 256.426 kb on + strandat 256.426 kb on + strandat 256.471 kb on + strandat 256.471 kb on + strandat 256.471 kb on + strandat 256.472 kb on - strandat 256.514 kb on + strandat 256.514 kb on + strandat 256.514 kb on + strandat 256.518 kb on + strandat 256.518 kb on + strandat 256.519 kb on - strandat 256.519 kb on - strandat 256.519 kb on - strandat 256.519 kb on - strandat 256.520 kb on + strandat 256.520 kb on + strandat 256.638 kb on + strandat 256.660 kb on + strandat 256.660 kb on + strandat 256.660 kb on + strandat 256.660 kb on + strandat 256.660 kb on + strandat 256.666 kb on + strandat 256.782 kb on + strand, within EX31_RS25005at 256.805 kb on + strand, within EX31_RS25005at 256.823 kb on + strand, within EX31_RS25005at 256.823 kb on + strand, within EX31_RS25005at 256.848 kb on + strand, within EX31_RS25005at 257.050 kb on + strand, within EX31_RS18420at 257.050 kb on + strand, within EX31_RS18420at 257.050 kb on + strand, within EX31_RS18420at 257.189 kb on + strand, within EX31_RS18420at 257.244 kb on + strand, within EX31_RS18420at 257.248 kb on + strand, within EX31_RS18420at 257.249 kb on - strand, within EX31_RS18420at 257.331 kb on + strand, within EX31_RS18420at 257.402 kb on - strand, within EX31_RS18420at 257.412 kb on + strand, within EX31_RS18420at 257.438 kb on - strand, within EX31_RS18420at 257.484 kb on + strand, within EX31_RS18420at 258.038 kb on + strandat 258.070 kb on + strandat 258.071 kb on - strandat 258.071 kb on - strandat 258.121 kb on + strandat 258.263 kb on - strand, within EX31_RS18425at 258.419 kb on + strand, within EX31_RS18425at 258.419 kb on + strand, within EX31_RS18425at 258.420 kb on - strand, within EX31_RS18425at 258.420 kb on - strand, within EX31_RS18425at 258.421 kb on + strand, within EX31_RS18425at 258.421 kb on + strand, within EX31_RS18425at 258.421 kb on + strand, within EX31_RS18425at 258.421 kb on + strand, within EX31_RS18425at 258.421 kb on + strand, within EX31_RS18425at 258.421 kb on + strand, within EX31_RS18425at 258.422 kb on - strand, within EX31_RS18425at 258.422 kb on - strand, within EX31_RS18425at 258.422 kb on - strand, within EX31_RS18425at 258.422 kb on - strand, within EX31_RS18425at 258.422 kb on - strand, within EX31_RS18425at 258.422 kb on - strand, within EX31_RS18425at 258.422 kb on - strand, within EX31_RS18425at 258.422 kb on - strand, within EX31_RS18425at 258.422 kb on - strand, within EX31_RS18425at 258.422 kb on - strand, within EX31_RS18425at 258.422 kb on - strand, within EX31_RS18425at 258.422 kb on - strand, within EX31_RS18425at 258.422 kb on - strand, within EX31_RS18425at 258.422 kb on - strand, within EX31_RS18425at 258.423 kb on + strand, within EX31_RS18425at 258.423 kb on + strand, within EX31_RS18425at 258.423 kb on + strand, within EX31_RS18425at 258.423 kb on + strand, within EX31_RS18425at 258.423 kb on + strand, within EX31_RS18425at 258.423 kb on + strand, within EX31_RS18425at 258.424 kb on - strand, within EX31_RS18425at 258.424 kb on - strand, within EX31_RS18425at 258.424 kb on - strand, within EX31_RS18425at 258.424 kb on - strand, within EX31_RS18425at 258.424 kb on - strand, within EX31_RS18425at 258.424 kb on - strand, within EX31_RS18425at 258.424 kb on - strand, within EX31_RS18425at 258.553 kb on + strand, within EX31_RS18425at 258.554 kb on - strand, within EX31_RS18425at 258.560 kb on - strand, within EX31_RS18425at 258.572 kb on - strand, within EX31_RS18425at 258.580 kb on + strand, within EX31_RS18425at 258.581 kb on - strand, within EX31_RS18425at 258.581 kb on - strand, within EX31_RS18425at 258.671 kb on - strand, within EX31_RS18425at 258.685 kb on - strand, within EX31_RS18425at 258.685 kb on - strand, within EX31_RS18425at 258.685 kb on - strand, within EX31_RS18425at 258.695 kb on - strand, within EX31_RS18425at 258.696 kb on + strand, within EX31_RS18425at 258.696 kb on + strand, within EX31_RS18425at 258.696 kb on + strand, within EX31_RS18425at 258.696 kb on + strand, within EX31_RS18425at 258.697 kb on - strand, within EX31_RS18425at 258.697 kb on - strand, within EX31_RS18425at 258.721 kb on + strand, within EX31_RS18425at 258.721 kb on + strand, within EX31_RS18425at 258.722 kb on - strand, within EX31_RS18425at 258.722 kb on - strand, within EX31_RS18425

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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255,921 + EX31_RS18410 0.53 -0.4
255,921 + EX31_RS18410 0.53 -0.2
255,921 + EX31_RS18410 0.53 -0.1
255,921 + EX31_RS18410 0.53 +0.6
255,944 + EX31_RS18410 0.55 +1.3
255,991 + EX31_RS18410 0.58 +0.6
255,991 + EX31_RS18410 0.58 +1.0
255,991 + EX31_RS18410 0.58 +1.2
255,991 + EX31_RS18410 0.58 -0.5
255,991 + EX31_RS18410 0.58 +0.5
255,991 + EX31_RS18410 0.58 +0.2
255,991 + EX31_RS18410 0.58 -1.5
255,992 - EX31_RS18410 0.59 +0.3
255,992 - EX31_RS18410 0.59 +1.3
256,007 + EX31_RS18410 0.60 +0.3
256,060 - EX31_RS18410 0.64 -1.7
256,062 + EX31_RS18410 0.64 +0.1
256,063 - EX31_RS18410 0.64 -0.7
256,065 + EX31_RS18410 0.64 +0.9
256,065 + EX31_RS18410 0.64 +1.3
256,065 + EX31_RS18410 0.64 +0.5
256,065 + EX31_RS18410 0.64 +0.5
256,066 - EX31_RS18410 0.64 +0.4
256,066 - EX31_RS18410 0.64 -0.9
256,067 + EX31_RS18410 0.64 +0.4
256,102 + EX31_RS18410 0.67 +0.5
256,103 - EX31_RS18410 0.67 +1.4
256,103 - EX31_RS18410 0.67 +0.1
256,144 - EX31_RS18410 0.70 +0.1
256,176 + EX31_RS18410 0.72 +0.2
256,176 + EX31_RS18410 0.72 +0.5
256,177 - EX31_RS18410 0.72 +0.6
256,179 + EX31_RS18410 0.72 -0.0
256,206 + EX31_RS18410 0.74 +1.0
256,206 + EX31_RS18410 0.74 +0.1
256,206 + EX31_RS18410 0.74 +0.5
256,206 + EX31_RS18410 0.74 -0.9
256,206 + EX31_RS18410 0.74 -1.2
256,206 + EX31_RS18410 0.74 -0.6
256,206 + EX31_RS18410 0.74 -2.3
256,206 + EX31_RS18410 0.74 -1.8
256,206 + EX31_RS18410 0.74 -0.4
256,206 + EX31_RS18410 0.74 +0.1
256,206 + EX31_RS18410 0.74 +0.6
256,206 + EX31_RS18410 0.74 +1.3
256,206 + EX31_RS18410 0.74 +1.0
256,207 - EX31_RS18410 0.74 -1.1
256,207 - EX31_RS18410 0.74 +0.5
256,287 + EX31_RS18410 0.80 +0.5
256,287 + EX31_RS18410 0.80 +1.3
256,288 - EX31_RS18410 0.80 -0.2
256,288 - EX31_RS18410 0.80 +2.2
256,292 + EX31_RS18410 0.81 -0.1
256,292 + EX31_RS18410 0.81 +0.9
256,292 + EX31_RS18410 0.81 +0.9
256,293 - EX31_RS18410 0.81 -0.2
256,293 - EX31_RS18410 0.81 -0.4
256,302 + EX31_RS18410 0.81 +2.0
256,311 - EX31_RS18410 0.82 -0.7
256,311 - EX31_RS18410 0.82 +0.1
256,338 + EX31_RS18410 0.84 -3.2
256,338 + EX31_RS18410 0.84 -0.1
256,350 + EX31_RS18410 0.85 +1.1
256,350 + EX31_RS18410 0.85 +1.8
256,350 + EX31_RS18410 0.85 +0.3
256,350 + EX31_RS18410 0.85 -0.4
256,350 + EX31_RS18410 0.85 +0.6
256,350 + EX31_RS18410 0.85 +1.2
256,351 - EX31_RS18410 0.85 +4.0
256,357 - EX31_RS18410 0.85 -0.7
256,375 + EX31_RS18410 0.87 +1.2
256,375 + EX31_RS18410 0.87 -1.2
256,375 + EX31_RS18410 0.87 +0.6
256,375 + EX31_RS18410 0.87 +0.3
256,375 + EX31_RS18410 0.87 +1.1
256,376 - EX31_RS18410 0.87 +0.5
256,376 - EX31_RS18410 0.87 +0.9
256,376 - EX31_RS18410 0.87 +0.4
256,376 - EX31_RS18410 0.87 +0.1
256,377 + EX31_RS18410 0.87 +1.1
256,377 + EX31_RS18410 0.87 +1.8
256,377 + EX31_RS18410 0.87 -0.1
256,377 + EX31_RS18410 0.87 -0.3
256,378 - EX31_RS18410 0.87 +0.6
256,382 + EX31_RS18410 0.87 -0.4
256,382 + EX31_RS18410 0.87 -0.4
256,422 + -0.4
256,422 + +0.2
256,426 + -0.5
256,426 + +1.4
256,471 + +1.1
256,471 + +0.9
256,471 + -0.1
256,472 - +2.2
256,514 + +0.7
256,514 + -0.0
256,514 + -0.5
256,518 + -0.1
256,518 + +0.8
256,519 - -2.4
256,519 - +0.6
256,519 - +0.9
256,519 - -0.6
256,520 + +0.2
256,520 + +0.2
256,638 + -0.4
256,660 + -0.1
256,660 + +0.4
256,660 + -2.5
256,660 + -0.4
256,660 + -0.1
256,666 + +1.0
256,782 + EX31_RS25005 0.32 +0.0
256,805 + EX31_RS25005 0.44 -0.0
256,823 + EX31_RS25005 0.54 -0.4
256,823 + EX31_RS25005 0.54 +0.8
256,848 + EX31_RS25005 0.67 -1.1
257,050 + EX31_RS18420 0.19 +1.0
257,050 + EX31_RS18420 0.19 +1.0
257,050 + EX31_RS18420 0.19 +0.8
257,189 + EX31_RS18420 0.36 +1.1
257,244 + EX31_RS18420 0.42 +1.6
257,248 + EX31_RS18420 0.43 -1.4
257,249 - EX31_RS18420 0.43 +0.9
257,331 + EX31_RS18420 0.53 +0.1
257,402 - EX31_RS18420 0.61 +0.8
257,412 + EX31_RS18420 0.62 +0.7
257,438 - EX31_RS18420 0.66 +0.1
257,484 + EX31_RS18420 0.71 +0.3
258,038 + +0.5
258,070 + -0.9
258,071 - -0.8
258,071 - +1.8
258,121 + +1.6
258,263 - EX31_RS18425 0.12 -0.9
258,419 + EX31_RS18425 0.19 +0.6
258,419 + EX31_RS18425 0.19 +1.5
258,420 - EX31_RS18425 0.19 +1.6
258,420 - EX31_RS18425 0.19 +1.3
258,421 + EX31_RS18425 0.19 -0.0
258,421 + EX31_RS18425 0.19 -0.5
258,421 + EX31_RS18425 0.19 +0.8
258,421 + EX31_RS18425 0.19 -0.6
258,421 + EX31_RS18425 0.19 -0.9
258,421 + EX31_RS18425 0.19 -0.6
258,422 - EX31_RS18425 0.19 +0.2
258,422 - EX31_RS18425 0.19 +0.2
258,422 - EX31_RS18425 0.19 -0.5
258,422 - EX31_RS18425 0.19 +1.2
258,422 - EX31_RS18425 0.19 -1.4
258,422 - EX31_RS18425 0.19 +0.2
258,422 - EX31_RS18425 0.19 +0.2
258,422 - EX31_RS18425 0.19 -0.7
258,422 - EX31_RS18425 0.19 -0.7
258,422 - EX31_RS18425 0.19 +1.6
258,422 - EX31_RS18425 0.19 -1.1
258,422 - EX31_RS18425 0.19 +0.6
258,422 - EX31_RS18425 0.19 +3.2
258,422 - EX31_RS18425 0.19 +0.3
258,423 + EX31_RS18425 0.19 -0.5
258,423 + EX31_RS18425 0.19 +0.2
258,423 + EX31_RS18425 0.19 +1.5
258,423 + EX31_RS18425 0.19 +0.6
258,423 + EX31_RS18425 0.19 -0.4
258,423 + EX31_RS18425 0.19 -0.4
258,424 - EX31_RS18425 0.19 +0.8
258,424 - EX31_RS18425 0.19 +1.6
258,424 - EX31_RS18425 0.19 -0.8
258,424 - EX31_RS18425 0.19 -0.7
258,424 - EX31_RS18425 0.19 -0.7
258,424 - EX31_RS18425 0.19 -0.1
258,424 - EX31_RS18425 0.19 -0.4
258,553 + EX31_RS18425 0.26 -0.9
258,554 - EX31_RS18425 0.26 +1.1
258,560 - EX31_RS18425 0.26 -0.9
258,572 - EX31_RS18425 0.27 +0.1
258,580 + EX31_RS18425 0.27 -0.9
258,581 - EX31_RS18425 0.27 -1.4
258,581 - EX31_RS18425 0.27 +0.6
258,671 - EX31_RS18425 0.32 +0.2
258,685 - EX31_RS18425 0.32 +0.1
258,685 - EX31_RS18425 0.32 +0.2
258,685 - EX31_RS18425 0.32 -1.4
258,695 - EX31_RS18425 0.33 +0.6
258,696 + EX31_RS18425 0.33 +0.6
258,696 + EX31_RS18425 0.33 -0.2
258,696 + EX31_RS18425 0.33 -0.1
258,696 + EX31_RS18425 0.33 +0.1
258,697 - EX31_RS18425 0.33 +0.1
258,697 - EX31_RS18425 0.33 -0.9
258,721 + EX31_RS18425 0.34 -1.4
258,721 + EX31_RS18425 0.34 -0.7
258,722 - EX31_RS18425 0.34 +0.6
258,722 - EX31_RS18425 0.34 -2.2

Or see this region's nucleotide sequence