Strain Fitness in Rahnella sp. WP5 around EX31_RS14305

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS14295 and EX31_RS14300 are separated by 127 nucleotidesEX31_RS14300 and EX31_RS14305 are separated by 67 nucleotidesEX31_RS14305 and EX31_RS14310 are separated by 184 nucleotides EX31_RS14295: EX31_RS14295 - DUF1454 family protein, at 41,146 to 41,754 _RS14295 EX31_RS14300: EX31_RS14300 - triose-phosphate isomerase, at 41,882 to 42,649 _RS14300 EX31_RS14305: EX31_RS14305 - sulfate ABC transporter substrate-binding protein, at 42,717 to 43,706 _RS14305 EX31_RS14310: EX31_RS14310 - 6-phosphofructokinase, at 43,891 to 44,877 _RS14310 Position (kb) 42 43 44Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 41.767 kb on + strandat 41.789 kb on + strandat 41.805 kb on + strandat 41.806 kb on - strandat 41.806 kb on - strandat 41.807 kb on + strandat 41.807 kb on + strandat 41.807 kb on + strandat 41.807 kb on + strandat 41.807 kb on + strandat 41.807 kb on + strandat 41.808 kb on - strandat 41.821 kb on + strandat 41.821 kb on + strandat 41.821 kb on + strandat 41.821 kb on + strandat 41.822 kb on - strandat 41.830 kb on + strandat 41.830 kb on + strandat 41.830 kb on + strandat 41.830 kb on + strandat 42.638 kb on - strandat 42.638 kb on - strandat 42.647 kb on + strandat 42.647 kb on + strandat 42.707 kb on - strandat 42.707 kb on - strandat 42.874 kb on + strand, within EX31_RS14305at 42.910 kb on + strand, within EX31_RS14305at 42.911 kb on - strand, within EX31_RS14305at 42.916 kb on + strand, within EX31_RS14305at 42.916 kb on + strand, within EX31_RS14305at 42.916 kb on + strand, within EX31_RS14305at 42.916 kb on + strand, within EX31_RS14305at 42.916 kb on + strand, within EX31_RS14305at 42.916 kb on + strand, within EX31_RS14305at 42.916 kb on + strand, within EX31_RS14305at 42.916 kb on + strand, within EX31_RS14305at 42.917 kb on - strand, within EX31_RS14305at 42.917 kb on - strand, within EX31_RS14305at 42.917 kb on - strand, within EX31_RS14305at 42.917 kb on - strand, within EX31_RS14305at 42.917 kb on - strand, within EX31_RS14305at 42.917 kb on - strand, within EX31_RS14305at 42.926 kb on - strand, within EX31_RS14305at 42.941 kb on + strand, within EX31_RS14305at 42.941 kb on + strand, within EX31_RS14305at 42.942 kb on - strand, within EX31_RS14305at 42.956 kb on + strand, within EX31_RS14305at 42.956 kb on + strand, within EX31_RS14305at 42.968 kb on + strand, within EX31_RS14305at 43.031 kb on + strand, within EX31_RS14305at 43.031 kb on + strand, within EX31_RS14305at 43.032 kb on - strand, within EX31_RS14305at 43.115 kb on + strand, within EX31_RS14305at 43.115 kb on + strand, within EX31_RS14305at 43.115 kb on + strand, within EX31_RS14305at 43.116 kb on - strand, within EX31_RS14305at 43.118 kb on + strand, within EX31_RS14305at 43.119 kb on - strand, within EX31_RS14305at 43.119 kb on - strand, within EX31_RS14305at 43.160 kb on + strand, within EX31_RS14305at 43.161 kb on - strand, within EX31_RS14305at 43.163 kb on - strand, within EX31_RS14305at 43.163 kb on - strand, within EX31_RS14305at 43.163 kb on - strand, within EX31_RS14305at 43.163 kb on - strand, within EX31_RS14305at 43.240 kb on + strand, within EX31_RS14305at 43.241 kb on - strand, within EX31_RS14305at 43.241 kb on - strand, within EX31_RS14305at 43.268 kb on + strand, within EX31_RS14305at 43.268 kb on + strand, within EX31_RS14305at 43.274 kb on + strand, within EX31_RS14305at 43.274 kb on + strand, within EX31_RS14305at 43.280 kb on + strand, within EX31_RS14305at 43.280 kb on + strand, within EX31_RS14305at 43.281 kb on - strand, within EX31_RS14305at 43.281 kb on - strand, within EX31_RS14305at 43.281 kb on - strand, within EX31_RS14305at 43.290 kb on + strand, within EX31_RS14305at 43.372 kb on + strand, within EX31_RS14305at 43.372 kb on + strand, within EX31_RS14305at 43.373 kb on - strand, within EX31_RS14305at 43.436 kb on + strand, within EX31_RS14305at 43.436 kb on + strand, within EX31_RS14305at 43.437 kb on - strand, within EX31_RS14305at 43.450 kb on + strand, within EX31_RS14305at 43.450 kb on + strand, within EX31_RS14305at 43.450 kb on + strand, within EX31_RS14305at 43.451 kb on - strand, within EX31_RS14305at 43.451 kb on - strand, within EX31_RS14305at 43.468 kb on - strand, within EX31_RS14305at 43.490 kb on + strand, within EX31_RS14305at 43.490 kb on + strand, within EX31_RS14305at 43.490 kb on + strand, within EX31_RS14305at 43.494 kb on + strand, within EX31_RS14305at 43.495 kb on - strand, within EX31_RS14305at 43.495 kb on - strand, within EX31_RS14305at 43.495 kb on - strand, within EX31_RS14305at 43.495 kb on - strand, within EX31_RS14305at 43.502 kb on + strand, within EX31_RS14305at 43.502 kb on + strand, within EX31_RS14305at 43.502 kb on + strand, within EX31_RS14305at 43.502 kb on + strand, within EX31_RS14305at 43.502 kb on + strand, within EX31_RS14305at 43.503 kb on - strand, within EX31_RS14305at 43.503 kb on - strand, within EX31_RS14305at 43.537 kb on - strand, within EX31_RS14305at 43.547 kb on + strand, within EX31_RS14305at 43.570 kb on + strand, within EX31_RS14305at 43.571 kb on - strand, within EX31_RS14305at 43.571 kb on - strand, within EX31_RS14305at 43.574 kb on + strand, within EX31_RS14305at 43.575 kb on - strand, within EX31_RS14305at 43.589 kb on + strand, within EX31_RS14305at 43.589 kb on + strand, within EX31_RS14305at 43.589 kb on + strand, within EX31_RS14305at 43.589 kb on + strand, within EX31_RS14305at 43.589 kb on + strand, within EX31_RS14305at 43.589 kb on + strand, within EX31_RS14305at 43.589 kb on + strand, within EX31_RS14305at 43.589 kb on + strand, within EX31_RS14305at 43.589 kb on + strand, within EX31_RS14305at 43.590 kb on - strand, within EX31_RS14305at 43.590 kb on - strand, within EX31_RS14305at 43.590 kb on - strand, within EX31_RS14305at 43.590 kb on - strand, within EX31_RS14305at 43.590 kb on - strand, within EX31_RS14305at 43.590 kb on - strand, within EX31_RS14305at 43.590 kb on - strand, within EX31_RS14305at 43.590 kb on - strand, within EX31_RS14305at 43.590 kb on - strand, within EX31_RS14305at 43.590 kb on - strand, within EX31_RS14305at 43.591 kb on + strand, within EX31_RS14305at 43.591 kb on + strand, within EX31_RS14305at 43.591 kb on + strand, within EX31_RS14305at 43.591 kb on + strand, within EX31_RS14305at 43.591 kb on + strand, within EX31_RS14305at 43.591 kb on + strand, within EX31_RS14305at 43.591 kb on + strand, within EX31_RS14305at 43.592 kb on - strand, within EX31_RS14305at 43.592 kb on - strand, within EX31_RS14305at 43.592 kb on - strand, within EX31_RS14305at 43.592 kb on - strand, within EX31_RS14305at 43.592 kb on - strand, within EX31_RS14305at 43.592 kb on - strand, within EX31_RS14305at 43.592 kb on - strand, within EX31_RS14305at 43.592 kb on - strand, within EX31_RS14305at 43.592 kb on - strand, within EX31_RS14305at 43.592 kb on - strand, within EX31_RS14305at 43.592 kb on - strand, within EX31_RS14305at 43.592 kb on - strand, within EX31_RS14305at 43.592 kb on - strand, within EX31_RS14305at 43.592 kb on - strand, within EX31_RS14305at 43.600 kb on + strand, within EX31_RS14305at 43.600 kb on + strand, within EX31_RS14305at 43.600 kb on + strand, within EX31_RS14305at 43.601 kb on - strand, within EX31_RS14305at 43.622 kb on - strandat 43.622 kb on - strandat 43.646 kb on - strandat 43.700 kb on + strandat 43.700 kb on + strandat 43.700 kb on + strandat 43.701 kb on - strandat 43.701 kb on - strandat 43.701 kb on - strandat 43.701 kb on - strandat 43.701 kb on - strandat 43.709 kb on + strandat 43.709 kb on + strandat 43.709 kb on + strandat 43.710 kb on - strandat 43.710 kb on - strandat 43.710 kb on - strandat 43.710 kb on - strandat 43.722 kb on + strandat 43.722 kb on + strandat 43.722 kb on + strandat 43.722 kb on + strandat 43.723 kb on - strandat 43.723 kb on - strandat 43.723 kb on - strandat 43.723 kb on - strandat 43.723 kb on - strandat 43.723 kb on - strandat 43.729 kb on + strandat 43.742 kb on + strandat 43.743 kb on - strandat 43.743 kb on - strandat 43.771 kb on + strandat 43.787 kb on - strandat 43.794 kb on - strandat 43.812 kb on - strandat 43.883 kb on - strandat 44.028 kb on - strand, within EX31_RS14310at 44.064 kb on - strand, within EX31_RS14310at 44.089 kb on - strand, within EX31_RS14310at 44.097 kb on - strand, within EX31_RS14310at 44.132 kb on - strand, within EX31_RS14310at 44.132 kb on - strand, within EX31_RS14310at 44.174 kb on + strand, within EX31_RS14310at 44.308 kb on - strand, within EX31_RS14310at 44.379 kb on + strand, within EX31_RS14310at 44.386 kb on - strand, within EX31_RS14310at 44.468 kb on + strand, within EX31_RS14310at 44.469 kb on - strand, within EX31_RS14310at 44.469 kb on - strand, within EX31_RS14310at 44.469 kb on - strand, within EX31_RS14310at 44.469 kb on - strand, within EX31_RS14310at 44.559 kb on - strand, within EX31_RS14310at 44.559 kb on - strand, within EX31_RS14310at 44.559 kb on - strand, within EX31_RS14310at 44.559 kb on - strand, within EX31_RS14310at 44.596 kb on - strand, within EX31_RS14310at 44.611 kb on - strand, within EX31_RS14310at 44.629 kb on - strand, within EX31_RS14310

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
41,767 + -0.7
41,789 + +2.3
41,805 + +0.4
41,806 - -0.5
41,806 - -0.0
41,807 + +0.0
41,807 + -0.7
41,807 + -0.3
41,807 + +0.8
41,807 + -0.3
41,807 + -0.1
41,808 - -2.0
41,821 + +0.1
41,821 + +0.4
41,821 + +0.0
41,821 + +0.2
41,822 - -1.0
41,830 + +0.6
41,830 + +1.0
41,830 + -0.3
41,830 + -0.7
42,638 - -1.0
42,638 - +0.1
42,647 + +1.3
42,647 + +3.7
42,707 - +0.4
42,707 - +0.5
42,874 + EX31_RS14305 0.16 -0.3
42,910 + EX31_RS14305 0.19 -0.0
42,911 - EX31_RS14305 0.20 +1.0
42,916 + EX31_RS14305 0.20 -0.3
42,916 + EX31_RS14305 0.20 +1.0
42,916 + EX31_RS14305 0.20 -0.8
42,916 + EX31_RS14305 0.20 +1.3
42,916 + EX31_RS14305 0.20 +0.7
42,916 + EX31_RS14305 0.20 +2.3
42,916 + EX31_RS14305 0.20 +0.7
42,916 + EX31_RS14305 0.20 -0.7
42,917 - EX31_RS14305 0.20 +0.8
42,917 - EX31_RS14305 0.20 +0.1
42,917 - EX31_RS14305 0.20 +0.5
42,917 - EX31_RS14305 0.20 +0.7
42,917 - EX31_RS14305 0.20 +0.0
42,917 - EX31_RS14305 0.20 +0.4
42,926 - EX31_RS14305 0.21 -0.6
42,941 + EX31_RS14305 0.23 +1.1
42,941 + EX31_RS14305 0.23 +0.9
42,942 - EX31_RS14305 0.23 +0.1
42,956 + EX31_RS14305 0.24 -0.5
42,956 + EX31_RS14305 0.24 +1.0
42,968 + EX31_RS14305 0.25 +0.0
43,031 + EX31_RS14305 0.32 -1.1
43,031 + EX31_RS14305 0.32 -1.3
43,032 - EX31_RS14305 0.32 +2.0
43,115 + EX31_RS14305 0.40 +0.9
43,115 + EX31_RS14305 0.40 +0.3
43,115 + EX31_RS14305 0.40 +1.1
43,116 - EX31_RS14305 0.40 +0.5
43,118 + EX31_RS14305 0.41 +1.7
43,119 - EX31_RS14305 0.41 -0.6
43,119 - EX31_RS14305 0.41 -0.7
43,160 + EX31_RS14305 0.45 -0.4
43,161 - EX31_RS14305 0.45 -0.6
43,163 - EX31_RS14305 0.45 -0.3
43,163 - EX31_RS14305 0.45 +0.1
43,163 - EX31_RS14305 0.45 +0.0
43,163 - EX31_RS14305 0.45 -0.5
43,240 + EX31_RS14305 0.53 -0.5
43,241 - EX31_RS14305 0.53 +0.5
43,241 - EX31_RS14305 0.53 -1.0
43,268 + EX31_RS14305 0.56 +0.7
43,268 + EX31_RS14305 0.56 +0.7
43,274 + EX31_RS14305 0.56 +0.7
43,274 + EX31_RS14305 0.56 -0.1
43,280 + EX31_RS14305 0.57 -0.9
43,280 + EX31_RS14305 0.57 +0.5
43,281 - EX31_RS14305 0.57 +0.7
43,281 - EX31_RS14305 0.57 +0.1
43,281 - EX31_RS14305 0.57 +0.7
43,290 + EX31_RS14305 0.58 +0.7
43,372 + EX31_RS14305 0.66 -0.2
43,372 + EX31_RS14305 0.66 -0.7
43,373 - EX31_RS14305 0.66 +1.2
43,436 + EX31_RS14305 0.73 -1.0
43,436 + EX31_RS14305 0.73 +1.1
43,437 - EX31_RS14305 0.73 -0.4
43,450 + EX31_RS14305 0.74 +0.5
43,450 + EX31_RS14305 0.74 -1.2
43,450 + EX31_RS14305 0.74 -0.1
43,451 - EX31_RS14305 0.74 +0.3
43,451 - EX31_RS14305 0.74 -0.4
43,468 - EX31_RS14305 0.76 -1.6
43,490 + EX31_RS14305 0.78 +0.3
43,490 + EX31_RS14305 0.78 +0.8
43,490 + EX31_RS14305 0.78 +1.7
43,494 + EX31_RS14305 0.78 -1.8
43,495 - EX31_RS14305 0.79 +0.0
43,495 - EX31_RS14305 0.79 -1.1
43,495 - EX31_RS14305 0.79 -0.4
43,495 - EX31_RS14305 0.79 +0.6
43,502 + EX31_RS14305 0.79 +0.3
43,502 + EX31_RS14305 0.79 +0.2
43,502 + EX31_RS14305 0.79 +0.0
43,502 + EX31_RS14305 0.79 -0.3
43,502 + EX31_RS14305 0.79 +1.8
43,503 - EX31_RS14305 0.79 +0.9
43,503 - EX31_RS14305 0.79 -0.3
43,537 - EX31_RS14305 0.83 -0.2
43,547 + EX31_RS14305 0.84 -0.8
43,570 + EX31_RS14305 0.86 +0.7
43,571 - EX31_RS14305 0.86 +1.2
43,571 - EX31_RS14305 0.86 +0.7
43,574 + EX31_RS14305 0.87 +0.2
43,575 - EX31_RS14305 0.87 +0.6
43,589 + EX31_RS14305 0.88 +0.7
43,589 + EX31_RS14305 0.88 +0.2
43,589 + EX31_RS14305 0.88 +0.0
43,589 + EX31_RS14305 0.88 +1.0
43,589 + EX31_RS14305 0.88 +0.0
43,589 + EX31_RS14305 0.88 +0.3
43,589 + EX31_RS14305 0.88 +1.2
43,589 + EX31_RS14305 0.88 +0.3
43,589 + EX31_RS14305 0.88 +1.0
43,590 - EX31_RS14305 0.88 +0.1
43,590 - EX31_RS14305 0.88 +0.1
43,590 - EX31_RS14305 0.88 +0.7
43,590 - EX31_RS14305 0.88 -0.2
43,590 - EX31_RS14305 0.88 +0.2
43,590 - EX31_RS14305 0.88 -0.7
43,590 - EX31_RS14305 0.88 +0.9
43,590 - EX31_RS14305 0.88 +2.9
43,590 - EX31_RS14305 0.88 +0.3
43,590 - EX31_RS14305 0.88 -0.3
43,591 + EX31_RS14305 0.88 -0.2
43,591 + EX31_RS14305 0.88 -1.0
43,591 + EX31_RS14305 0.88 -1.0
43,591 + EX31_RS14305 0.88 +1.2
43,591 + EX31_RS14305 0.88 -0.4
43,591 + EX31_RS14305 0.88 -1.7
43,591 + EX31_RS14305 0.88 +0.1
43,592 - EX31_RS14305 0.88 +1.6
43,592 - EX31_RS14305 0.88 -1.0
43,592 - EX31_RS14305 0.88 +1.3
43,592 - EX31_RS14305 0.88 +0.2
43,592 - EX31_RS14305 0.88 -1.6
43,592 - EX31_RS14305 0.88 +3.3
43,592 - EX31_RS14305 0.88 -0.7
43,592 - EX31_RS14305 0.88 +0.1
43,592 - EX31_RS14305 0.88 +0.5
43,592 - EX31_RS14305 0.88 +0.2
43,592 - EX31_RS14305 0.88 -0.6
43,592 - EX31_RS14305 0.88 +0.1
43,592 - EX31_RS14305 0.88 +0.4
43,592 - EX31_RS14305 0.88 +1.5
43,600 + EX31_RS14305 0.89 +0.1
43,600 + EX31_RS14305 0.89 +3.3
43,600 + EX31_RS14305 0.89 +0.6
43,601 - EX31_RS14305 0.89 -1.3
43,622 - -0.2
43,622 - +1.2
43,646 - -0.5
43,700 + +1.6
43,700 + +1.6
43,700 + +0.7
43,701 - -0.3
43,701 - +0.1
43,701 - -1.1
43,701 - +3.3
43,701 - +0.3
43,709 + +0.8
43,709 + +0.4
43,709 + +1.2
43,710 - -0.7
43,710 - +0.5
43,710 - +0.4
43,710 - +0.0
43,722 + +0.1
43,722 + +0.4
43,722 + -0.3
43,722 + +0.0
43,723 - +0.4
43,723 - +0.4
43,723 - +1.4
43,723 - +0.6
43,723 - +1.0
43,723 - +1.2
43,729 + +0.4
43,742 + +0.0
43,743 - -0.3
43,743 - +0.7
43,771 + -0.1
43,787 - -0.6
43,794 - -0.1
43,812 - +1.3
43,883 - -0.0
44,028 - EX31_RS14310 0.14 -2.6
44,064 - EX31_RS14310 0.18 -2.1
44,089 - EX31_RS14310 0.20 -2.1
44,097 - EX31_RS14310 0.21 -2.5
44,132 - EX31_RS14310 0.24 -0.1
44,132 - EX31_RS14310 0.24 -1.5
44,174 + EX31_RS14310 0.29 -1.8
44,308 - EX31_RS14310 0.42 -1.7
44,379 + EX31_RS14310 0.49 +0.3
44,386 - EX31_RS14310 0.50 -3.0
44,468 + EX31_RS14310 0.58 -0.7
44,469 - EX31_RS14310 0.59 +0.3
44,469 - EX31_RS14310 0.59 -1.8
44,469 - EX31_RS14310 0.59 -0.7
44,469 - EX31_RS14310 0.59 -1.7
44,559 - EX31_RS14310 0.68 -1.0
44,559 - EX31_RS14310 0.68 -1.5
44,559 - EX31_RS14310 0.68 -1.3
44,559 - EX31_RS14310 0.68 -1.5
44,596 - EX31_RS14310 0.71 -2.1
44,611 - EX31_RS14310 0.73 -1.3
44,629 - EX31_RS14310 0.75 +2.7

Or see this region's nucleotide sequence