Strain Fitness in Rahnella sp. WP5 around EX31_RS12590

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS12580 and EX31_RS12585 overlap by 19 nucleotidesEX31_RS12585 and EX31_RS12590 are separated by 4 nucleotidesEX31_RS12590 and EX31_RS12595 are separated by 18 nucleotides EX31_RS12580: EX31_RS12580 - hypothetical protein, at 188,348 to 188,851 _RS12580 EX31_RS12585: EX31_RS12585 - hypothetical protein, at 188,833 to 189,681 _RS12585 EX31_RS12590: EX31_RS12590 - hypothetical protein, at 189,686 to 190,243 _RS12590 EX31_RS12595: EX31_RS12595 - type II and III secretion system protein, at 190,262 to 191,710 _RS12595 Position (kb) 189 190 191Strain fitness (log2 ratio) -2 -1 0 1 2 3at 188.695 kb on + strand, within EX31_RS12580at 188.695 kb on + strand, within EX31_RS12580at 188.696 kb on - strand, within EX31_RS12580at 188.728 kb on + strand, within EX31_RS12580at 188.729 kb on - strand, within EX31_RS12580at 188.729 kb on - strand, within EX31_RS12580at 188.729 kb on - strand, within EX31_RS12580at 188.729 kb on - strand, within EX31_RS12580at 188.729 kb on - strand, within EX31_RS12580at 188.729 kb on - strand, within EX31_RS12580at 188.780 kb on - strand, within EX31_RS12580at 188.948 kb on + strand, within EX31_RS12585at 188.948 kb on + strand, within EX31_RS12585at 188.949 kb on - strand, within EX31_RS12585at 188.953 kb on + strand, within EX31_RS12585at 188.954 kb on - strand, within EX31_RS12585at 188.954 kb on - strand, within EX31_RS12585at 188.959 kb on + strand, within EX31_RS12585at 189.010 kb on - strand, within EX31_RS12585at 189.049 kb on - strand, within EX31_RS12585at 189.143 kb on - strand, within EX31_RS12585at 189.470 kb on + strand, within EX31_RS12585at 189.473 kb on + strand, within EX31_RS12585at 189.473 kb on + strand, within EX31_RS12585at 189.555 kb on - strand, within EX31_RS12585at 189.555 kb on - strand, within EX31_RS12585at 189.560 kb on + strand, within EX31_RS12585at 189.560 kb on + strand, within EX31_RS12585at 189.560 kb on + strand, within EX31_RS12585at 189.561 kb on - strand, within EX31_RS12585at 189.566 kb on + strand, within EX31_RS12585at 189.676 kb on + strandat 189.705 kb on + strandat 189.821 kb on - strand, within EX31_RS12590at 189.867 kb on + strand, within EX31_RS12590at 190.119 kb on + strand, within EX31_RS12590at 190.119 kb on + strand, within EX31_RS12590at 190.119 kb on + strand, within EX31_RS12590at 190.120 kb on - strand, within EX31_RS12590at 190.120 kb on - strand, within EX31_RS12590at 190.123 kb on + strand, within EX31_RS12590at 190.123 kb on + strand, within EX31_RS12590at 190.124 kb on - strand, within EX31_RS12590at 190.124 kb on - strand, within EX31_RS12590at 190.124 kb on - strand, within EX31_RS12590at 190.124 kb on - strand, within EX31_RS12590at 190.124 kb on - strand, within EX31_RS12590at 190.140 kb on - strand, within EX31_RS12590at 190.141 kb on + strand, within EX31_RS12590at 190.142 kb on - strand, within EX31_RS12590at 190.161 kb on + strand, within EX31_RS12590at 190.216 kb on + strandat 190.234 kb on + strandat 190.234 kb on + strandat 190.234 kb on + strandat 190.235 kb on - strandat 190.238 kb on + strandat 190.239 kb on - strandat 190.284 kb on + strandat 190.288 kb on - strandat 190.349 kb on + strandat 190.349 kb on + strandat 190.349 kb on + strandat 190.350 kb on - strandat 190.360 kb on - strandat 190.393 kb on - strandat 190.409 kb on + strand, within EX31_RS12595at 190.410 kb on - strand, within EX31_RS12595at 190.414 kb on + strand, within EX31_RS12595at 190.414 kb on + strand, within EX31_RS12595at 190.415 kb on - strand, within EX31_RS12595at 190.415 kb on - strand, within EX31_RS12595at 190.415 kb on - strand, within EX31_RS12595at 190.490 kb on + strand, within EX31_RS12595at 190.490 kb on + strand, within EX31_RS12595at 190.490 kb on + strand, within EX31_RS12595at 190.490 kb on + strand, within EX31_RS12595at 190.490 kb on + strand, within EX31_RS12595at 190.490 kb on + strand, within EX31_RS12595at 190.490 kb on + strand, within EX31_RS12595at 190.490 kb on + strand, within EX31_RS12595at 190.490 kb on + strand, within EX31_RS12595at 190.490 kb on + strand, within EX31_RS12595at 190.490 kb on + strand, within EX31_RS12595at 190.490 kb on + strand, within EX31_RS12595at 190.491 kb on - strand, within EX31_RS12595at 190.491 kb on - strand, within EX31_RS12595at 190.491 kb on - strand, within EX31_RS12595at 190.491 kb on - strand, within EX31_RS12595at 190.492 kb on + strand, within EX31_RS12595at 190.492 kb on + strand, within EX31_RS12595at 190.493 kb on - strand, within EX31_RS12595at 190.493 kb on - strand, within EX31_RS12595at 190.493 kb on - strand, within EX31_RS12595at 190.499 kb on + strand, within EX31_RS12595at 190.514 kb on - strand, within EX31_RS12595at 190.561 kb on + strand, within EX31_RS12595at 190.561 kb on + strand, within EX31_RS12595at 190.564 kb on + strand, within EX31_RS12595at 190.564 kb on + strand, within EX31_RS12595at 190.565 kb on - strand, within EX31_RS12595at 190.567 kb on + strand, within EX31_RS12595at 190.567 kb on + strand, within EX31_RS12595at 190.568 kb on - strand, within EX31_RS12595at 190.568 kb on - strand, within EX31_RS12595at 190.568 kb on - strand, within EX31_RS12595at 190.659 kb on + strand, within EX31_RS12595at 190.659 kb on + strand, within EX31_RS12595at 190.659 kb on + strand, within EX31_RS12595at 190.659 kb on + strand, within EX31_RS12595at 190.660 kb on - strand, within EX31_RS12595at 190.660 kb on - strand, within EX31_RS12595at 190.699 kb on + strand, within EX31_RS12595at 190.700 kb on - strand, within EX31_RS12595at 190.735 kb on + strand, within EX31_RS12595at 190.735 kb on + strand, within EX31_RS12595at 190.736 kb on - strand, within EX31_RS12595at 190.736 kb on - strand, within EX31_RS12595at 190.736 kb on - strand, within EX31_RS12595at 190.745 kb on - strand, within EX31_RS12595at 190.752 kb on + strand, within EX31_RS12595at 190.752 kb on + strand, within EX31_RS12595at 190.753 kb on - strand, within EX31_RS12595at 190.764 kb on - strand, within EX31_RS12595at 190.764 kb on - strand, within EX31_RS12595at 190.823 kb on + strand, within EX31_RS12595at 190.824 kb on - strand, within EX31_RS12595at 190.828 kb on + strand, within EX31_RS12595at 190.828 kb on + strand, within EX31_RS12595at 190.829 kb on - strand, within EX31_RS12595at 190.829 kb on - strand, within EX31_RS12595at 190.843 kb on + strand, within EX31_RS12595at 190.843 kb on + strand, within EX31_RS12595at 190.843 kb on + strand, within EX31_RS12595at 190.844 kb on - strand, within EX31_RS12595at 190.844 kb on - strand, within EX31_RS12595at 190.871 kb on + strand, within EX31_RS12595at 190.871 kb on + strand, within EX31_RS12595at 190.871 kb on + strand, within EX31_RS12595at 190.872 kb on - strand, within EX31_RS12595at 190.872 kb on - strand, within EX31_RS12595at 190.872 kb on - strand, within EX31_RS12595at 190.872 kb on - strand, within EX31_RS12595at 190.872 kb on - strand, within EX31_RS12595at 190.872 kb on - strand, within EX31_RS12595at 190.872 kb on - strand, within EX31_RS12595at 190.872 kb on - strand, within EX31_RS12595at 190.872 kb on - strand, within EX31_RS12595at 190.872 kb on - strand, within EX31_RS12595at 190.872 kb on - strand, within EX31_RS12595at 190.872 kb on - strand, within EX31_RS12595at 190.872 kb on - strand, within EX31_RS12595at 190.872 kb on - strand, within EX31_RS12595at 190.872 kb on - strand, within EX31_RS12595at 190.875 kb on + strand, within EX31_RS12595at 190.875 kb on + strand, within EX31_RS12595at 190.876 kb on - strand, within EX31_RS12595at 190.876 kb on - strand, within EX31_RS12595at 190.876 kb on - strand, within EX31_RS12595at 190.883 kb on - strand, within EX31_RS12595at 190.883 kb on - strand, within EX31_RS12595at 190.900 kb on - strand, within EX31_RS12595at 190.918 kb on + strand, within EX31_RS12595at 190.936 kb on + strand, within EX31_RS12595at 190.938 kb on + strand, within EX31_RS12595at 190.961 kb on - strand, within EX31_RS12595at 191.002 kb on + strand, within EX31_RS12595at 191.002 kb on + strand, within EX31_RS12595at 191.004 kb on + strand, within EX31_RS12595at 191.004 kb on + strand, within EX31_RS12595at 191.004 kb on + strand, within EX31_RS12595at 191.048 kb on - strand, within EX31_RS12595at 191.054 kb on - strand, within EX31_RS12595at 191.058 kb on + strand, within EX31_RS12595at 191.058 kb on + strand, within EX31_RS12595at 191.058 kb on + strand, within EX31_RS12595at 191.058 kb on + strand, within EX31_RS12595at 191.058 kb on + strand, within EX31_RS12595at 191.059 kb on - strand, within EX31_RS12595at 191.059 kb on - strand, within EX31_RS12595at 191.059 kb on - strand, within EX31_RS12595at 191.059 kb on - strand, within EX31_RS12595at 191.059 kb on - strand, within EX31_RS12595at 191.059 kb on - strand, within EX31_RS12595at 191.076 kb on + strand, within EX31_RS12595at 191.076 kb on + strand, within EX31_RS12595at 191.076 kb on + strand, within EX31_RS12595at 191.077 kb on - strand, within EX31_RS12595at 191.077 kb on - strand, within EX31_RS12595at 191.077 kb on - strand, within EX31_RS12595at 191.077 kb on - strand, within EX31_RS12595at 191.156 kb on - strand, within EX31_RS12595at 191.170 kb on + strand, within EX31_RS12595at 191.174 kb on + strand, within EX31_RS12595at 191.174 kb on + strand, within EX31_RS12595at 191.175 kb on - strand, within EX31_RS12595at 191.175 kb on - strand, within EX31_RS12595at 191.175 kb on - strand, within EX31_RS12595at 191.227 kb on + strand, within EX31_RS12595at 191.227 kb on + strand, within EX31_RS12595at 191.228 kb on - strand, within EX31_RS12595at 191.228 kb on - strand, within EX31_RS12595at 191.233 kb on - strand, within EX31_RS12595at 191.233 kb on - strand, within EX31_RS12595at 191.239 kb on + strand, within EX31_RS12595at 191.239 kb on + strand, within EX31_RS12595at 191.240 kb on - strand, within EX31_RS12595at 191.240 kb on - strand, within EX31_RS12595at 191.240 kb on - strand, within EX31_RS12595at 191.241 kb on + strand, within EX31_RS12595at 191.241 kb on + strand, within EX31_RS12595at 191.241 kb on + strand, within EX31_RS12595at 191.242 kb on - strand, within EX31_RS12595at 191.242 kb on - strand, within EX31_RS12595

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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188,695 + EX31_RS12580 0.69 +0.3
188,695 + EX31_RS12580 0.69 -0.4
188,696 - EX31_RS12580 0.69 +0.3
188,728 + EX31_RS12580 0.75 +0.8
188,729 - EX31_RS12580 0.76 +0.3
188,729 - EX31_RS12580 0.76 -0.7
188,729 - EX31_RS12580 0.76 -0.4
188,729 - EX31_RS12580 0.76 +1.4
188,729 - EX31_RS12580 0.76 +0.7
188,729 - EX31_RS12580 0.76 -2.0
188,780 - EX31_RS12580 0.86 +0.6
188,948 + EX31_RS12585 0.14 +1.2
188,948 + EX31_RS12585 0.14 +0.8
188,949 - EX31_RS12585 0.14 +1.4
188,953 + EX31_RS12585 0.14 +0.7
188,954 - EX31_RS12585 0.14 -0.1
188,954 - EX31_RS12585 0.14 +0.0
188,959 + EX31_RS12585 0.15 +0.3
189,010 - EX31_RS12585 0.21 +0.4
189,049 - EX31_RS12585 0.25 +0.9
189,143 - EX31_RS12585 0.37 +1.4
189,470 + EX31_RS12585 0.75 +0.8
189,473 + EX31_RS12585 0.75 -0.7
189,473 + EX31_RS12585 0.75 +1.0
189,555 - EX31_RS12585 0.85 +1.3
189,555 - EX31_RS12585 0.85 +0.8
189,560 + EX31_RS12585 0.86 +0.9
189,560 + EX31_RS12585 0.86 +1.0
189,560 + EX31_RS12585 0.86 +1.2
189,561 - EX31_RS12585 0.86 -1.0
189,566 + EX31_RS12585 0.86 +0.6
189,676 + -0.1
189,705 + +0.9
189,821 - EX31_RS12590 0.24 -0.1
189,867 + EX31_RS12590 0.32 -1.4
190,119 + EX31_RS12590 0.78 -0.6
190,119 + EX31_RS12590 0.78 +1.9
190,119 + EX31_RS12590 0.78 +1.3
190,120 - EX31_RS12590 0.78 +1.2
190,120 - EX31_RS12590 0.78 -0.8
190,123 + EX31_RS12590 0.78 +2.2
190,123 + EX31_RS12590 0.78 +0.7
190,124 - EX31_RS12590 0.78 +0.9
190,124 - EX31_RS12590 0.78 +0.6
190,124 - EX31_RS12590 0.78 +0.6
190,124 - EX31_RS12590 0.78 +2.0
190,124 - EX31_RS12590 0.78 +0.2
190,140 - EX31_RS12590 0.81 +2.1
190,141 + EX31_RS12590 0.82 +1.2
190,142 - EX31_RS12590 0.82 -1.4
190,161 + EX31_RS12590 0.85 -0.3
190,216 + -0.2
190,234 + +0.3
190,234 + +1.2
190,234 + +0.2
190,235 - +0.0
190,238 + -1.2
190,239 - +1.0
190,284 + +0.8
190,288 - -0.4
190,349 + +0.4
190,349 + -0.4
190,349 + -0.9
190,350 - +0.8
190,360 - -0.2
190,393 - +0.6
190,409 + EX31_RS12595 0.10 +0.7
190,410 - EX31_RS12595 0.10 +1.6
190,414 + EX31_RS12595 0.10 +0.3
190,414 + EX31_RS12595 0.10 +0.3
190,415 - EX31_RS12595 0.11 +1.6
190,415 - EX31_RS12595 0.11 -0.1
190,415 - EX31_RS12595 0.11 +0.7
190,490 + EX31_RS12595 0.16 +1.6
190,490 + EX31_RS12595 0.16 -0.0
190,490 + EX31_RS12595 0.16 +0.6
190,490 + EX31_RS12595 0.16 -0.1
190,490 + EX31_RS12595 0.16 -0.4
190,490 + EX31_RS12595 0.16 +1.5
190,490 + EX31_RS12595 0.16 -0.4
190,490 + EX31_RS12595 0.16 -0.6
190,490 + EX31_RS12595 0.16 -0.1
190,490 + EX31_RS12595 0.16 +0.4
190,490 + EX31_RS12595 0.16 +3.2
190,490 + EX31_RS12595 0.16 +0.9
190,491 - EX31_RS12595 0.16 -0.2
190,491 - EX31_RS12595 0.16 -0.1
190,491 - EX31_RS12595 0.16 +0.4
190,491 - EX31_RS12595 0.16 +0.6
190,492 + EX31_RS12595 0.16 +1.0
190,492 + EX31_RS12595 0.16 +0.2
190,493 - EX31_RS12595 0.16 -0.3
190,493 - EX31_RS12595 0.16 +0.6
190,493 - EX31_RS12595 0.16 +0.5
190,499 + EX31_RS12595 0.16 -0.0
190,514 - EX31_RS12595 0.17 -0.7
190,561 + EX31_RS12595 0.21 -0.7
190,561 + EX31_RS12595 0.21 +0.5
190,564 + EX31_RS12595 0.21 +0.0
190,564 + EX31_RS12595 0.21 +0.8
190,565 - EX31_RS12595 0.21 +0.2
190,567 + EX31_RS12595 0.21 -0.4
190,567 + EX31_RS12595 0.21 +2.0
190,568 - EX31_RS12595 0.21 +1.2
190,568 - EX31_RS12595 0.21 -0.2
190,568 - EX31_RS12595 0.21 -0.0
190,659 + EX31_RS12595 0.27 +1.6
190,659 + EX31_RS12595 0.27 +1.6
190,659 + EX31_RS12595 0.27 -0.4
190,659 + EX31_RS12595 0.27 +0.9
190,660 - EX31_RS12595 0.27 +0.8
190,660 - EX31_RS12595 0.27 +1.7
190,699 + EX31_RS12595 0.30 +1.0
190,700 - EX31_RS12595 0.30 +1.6
190,735 + EX31_RS12595 0.33 +0.7
190,735 + EX31_RS12595 0.33 +3.7
190,736 - EX31_RS12595 0.33 -0.4
190,736 - EX31_RS12595 0.33 +0.2
190,736 - EX31_RS12595 0.33 -1.3
190,745 - EX31_RS12595 0.33 -1.4
190,752 + EX31_RS12595 0.34 +0.3
190,752 + EX31_RS12595 0.34 -0.1
190,753 - EX31_RS12595 0.34 -1.6
190,764 - EX31_RS12595 0.35 -1.0
190,764 - EX31_RS12595 0.35 -0.2
190,823 + EX31_RS12595 0.39 +1.0
190,824 - EX31_RS12595 0.39 -0.5
190,828 + EX31_RS12595 0.39 +0.7
190,828 + EX31_RS12595 0.39 +0.2
190,829 - EX31_RS12595 0.39 +0.2
190,829 - EX31_RS12595 0.39 -0.7
190,843 + EX31_RS12595 0.40 -0.3
190,843 + EX31_RS12595 0.40 +1.2
190,843 + EX31_RS12595 0.40 +0.3
190,844 - EX31_RS12595 0.40 +0.2
190,844 - EX31_RS12595 0.40 +0.2
190,871 + EX31_RS12595 0.42 -1.2
190,871 + EX31_RS12595 0.42 +1.6
190,871 + EX31_RS12595 0.42 +1.5
190,872 - EX31_RS12595 0.42 +0.4
190,872 - EX31_RS12595 0.42 -0.1
190,872 - EX31_RS12595 0.42 +0.6
190,872 - EX31_RS12595 0.42 -1.5
190,872 - EX31_RS12595 0.42 +3.1
190,872 - EX31_RS12595 0.42 -0.8
190,872 - EX31_RS12595 0.42 +2.1
190,872 - EX31_RS12595 0.42 +0.9
190,872 - EX31_RS12595 0.42 +1.8
190,872 - EX31_RS12595 0.42 +1.0
190,872 - EX31_RS12595 0.42 +0.4
190,872 - EX31_RS12595 0.42 +0.5
190,872 - EX31_RS12595 0.42 +1.0
190,872 - EX31_RS12595 0.42 +2.5
190,872 - EX31_RS12595 0.42 +1.2
190,875 + EX31_RS12595 0.42 +0.4
190,875 + EX31_RS12595 0.42 -0.4
190,876 - EX31_RS12595 0.42 -0.3
190,876 - EX31_RS12595 0.42 -1.7
190,876 - EX31_RS12595 0.42 -0.2
190,883 - EX31_RS12595 0.43 +0.6
190,883 - EX31_RS12595 0.43 +0.2
190,900 - EX31_RS12595 0.44 +0.6
190,918 + EX31_RS12595 0.45 +2.0
190,936 + EX31_RS12595 0.47 -0.8
190,938 + EX31_RS12595 0.47 +2.3
190,961 - EX31_RS12595 0.48 -0.1
191,002 + EX31_RS12595 0.51 +1.2
191,002 + EX31_RS12595 0.51 +0.3
191,004 + EX31_RS12595 0.51 +1.2
191,004 + EX31_RS12595 0.51 -0.7
191,004 + EX31_RS12595 0.51 -0.4
191,048 - EX31_RS12595 0.54 -0.3
191,054 - EX31_RS12595 0.55 -0.4
191,058 + EX31_RS12595 0.55 +1.5
191,058 + EX31_RS12595 0.55 -1.2
191,058 + EX31_RS12595 0.55 +1.8
191,058 + EX31_RS12595 0.55 +0.3
191,058 + EX31_RS12595 0.55 +0.4
191,059 - EX31_RS12595 0.55 +1.2
191,059 - EX31_RS12595 0.55 -0.1
191,059 - EX31_RS12595 0.55 -0.2
191,059 - EX31_RS12595 0.55 +0.0
191,059 - EX31_RS12595 0.55 +0.3
191,059 - EX31_RS12595 0.55 +0.6
191,076 + EX31_RS12595 0.56 +0.1
191,076 + EX31_RS12595 0.56 +0.6
191,076 + EX31_RS12595 0.56 -0.5
191,077 - EX31_RS12595 0.56 +0.4
191,077 - EX31_RS12595 0.56 -0.2
191,077 - EX31_RS12595 0.56 -0.4
191,077 - EX31_RS12595 0.56 +1.4
191,156 - EX31_RS12595 0.62 -0.4
191,170 + EX31_RS12595 0.63 +0.7
191,174 + EX31_RS12595 0.63 +0.7
191,174 + EX31_RS12595 0.63 +0.5
191,175 - EX31_RS12595 0.63 -0.8
191,175 - EX31_RS12595 0.63 +1.9
191,175 - EX31_RS12595 0.63 +1.2
191,227 + EX31_RS12595 0.67 -0.8
191,227 + EX31_RS12595 0.67 -0.3
191,228 - EX31_RS12595 0.67 +1.6
191,228 - EX31_RS12595 0.67 +1.2
191,233 - EX31_RS12595 0.67 +0.7
191,233 - EX31_RS12595 0.67 +0.3
191,239 + EX31_RS12595 0.67 -0.0
191,239 + EX31_RS12595 0.67 +1.5
191,240 - EX31_RS12595 0.67 -0.2
191,240 - EX31_RS12595 0.67 -0.9
191,240 - EX31_RS12595 0.67 +0.4
191,241 + EX31_RS12595 0.68 +0.8
191,241 + EX31_RS12595 0.68 +0.2
191,241 + EX31_RS12595 0.68 -1.0
191,242 - EX31_RS12595 0.68 +1.3
191,242 - EX31_RS12595 0.68 +1.7

Or see this region's nucleotide sequence