Strain Fitness in Rahnella sp. WP5 around EX31_RS01100

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS01090 and EX31_RS01095 overlap by 4 nucleotidesEX31_RS01095 and EX31_RS01100 are separated by 139 nucleotidesEX31_RS01100 and EX31_RS01105 are separated by 166 nucleotides EX31_RS01090: EX31_RS01090 - metal ABC transporter permease, at 237,057 to 237,911 _RS01090 EX31_RS01095: EX31_RS01095 - metal ABC transporter permease, at 237,908 to 238,762 _RS01095 EX31_RS01100: EX31_RS01100 - hypothetical protein, at 238,902 to 239,081 _RS01100 EX31_RS01105: EX31_RS01105 - tryptophan permease, at 239,248 to 240,492 _RS01105 Position (kb) 238 239 240Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 237.956 kb on - strandat 238.080 kb on + strand, within EX31_RS01095at 238.091 kb on + strand, within EX31_RS01095at 238.219 kb on + strand, within EX31_RS01095at 238.434 kb on + strand, within EX31_RS01095at 238.448 kb on + strand, within EX31_RS01095at 238.449 kb on - strand, within EX31_RS01095at 238.462 kb on + strand, within EX31_RS01095at 238.462 kb on + strand, within EX31_RS01095at 238.462 kb on + strand, within EX31_RS01095at 238.462 kb on + strand, within EX31_RS01095at 238.462 kb on + strand, within EX31_RS01095at 238.462 kb on + strand, within EX31_RS01095at 238.463 kb on - strand, within EX31_RS01095at 238.640 kb on + strand, within EX31_RS01095at 238.640 kb on + strand, within EX31_RS01095at 238.640 kb on + strand, within EX31_RS01095at 238.640 kb on + strand, within EX31_RS01095at 238.641 kb on - strand, within EX31_RS01095at 238.641 kb on - strand, within EX31_RS01095at 238.641 kb on - strand, within EX31_RS01095at 238.641 kb on - strand, within EX31_RS01095at 238.642 kb on + strand, within EX31_RS01095at 238.642 kb on + strand, within EX31_RS01095at 238.756 kb on + strandat 238.760 kb on + strandat 238.760 kb on + strandat 238.760 kb on + strandat 238.841 kb on - strandat 238.884 kb on + strandat 238.884 kb on + strandat 238.885 kb on - strandat 238.901 kb on + strandat 238.901 kb on + strandat 238.901 kb on + strandat 238.901 kb on + strandat 239.073 kb on - strandat 239.079 kb on + strandat 239.117 kb on + strandat 239.189 kb on - strandat 239.189 kb on - strandat 239.191 kb on - strandat 239.191 kb on - strandat 239.191 kb on - strandat 239.196 kb on - strandat 239.258 kb on - strandat 239.273 kb on - strandat 239.337 kb on + strandat 239.358 kb on - strandat 239.358 kb on - strandat 239.461 kb on - strand, within EX31_RS01105at 239.475 kb on - strand, within EX31_RS01105at 239.571 kb on - strand, within EX31_RS01105at 239.698 kb on - strand, within EX31_RS01105at 239.698 kb on - strand, within EX31_RS01105at 239.698 kb on - strand, within EX31_RS01105at 239.774 kb on + strand, within EX31_RS01105at 239.774 kb on + strand, within EX31_RS01105at 239.775 kb on - strand, within EX31_RS01105at 239.775 kb on - strand, within EX31_RS01105at 239.775 kb on - strand, within EX31_RS01105at 239.775 kb on - strand, within EX31_RS01105at 239.775 kb on - strand, within EX31_RS01105at 239.791 kb on - strand, within EX31_RS01105at 239.844 kb on - strand, within EX31_RS01105at 239.861 kb on - strand, within EX31_RS01105at 239.915 kb on + strand, within EX31_RS01105at 239.915 kb on + strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.924 kb on + strand, within EX31_RS01105at 239.924 kb on + strand, within EX31_RS01105at 239.924 kb on + strand, within EX31_RS01105at 239.924 kb on + strand, within EX31_RS01105at 239.924 kb on + strand, within EX31_RS01105at 239.925 kb on - strand, within EX31_RS01105at 239.980 kb on + strand, within EX31_RS01105at 239.981 kb on - strand, within EX31_RS01105at 239.981 kb on - strand, within EX31_RS01105at 239.981 kb on - strand, within EX31_RS01105

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
237,956 - -0.5
238,080 + EX31_RS01095 0.20 -0.5
238,091 + EX31_RS01095 0.21 +0.7
238,219 + EX31_RS01095 0.36 -0.1
238,434 + EX31_RS01095 0.62 -0.6
238,448 + EX31_RS01095 0.63 -0.3
238,449 - EX31_RS01095 0.63 -1.5
238,462 + EX31_RS01095 0.65 -2.1
238,462 + EX31_RS01095 0.65 +0.5
238,462 + EX31_RS01095 0.65 +1.4
238,462 + EX31_RS01095 0.65 -1.0
238,462 + EX31_RS01095 0.65 -0.5
238,462 + EX31_RS01095 0.65 -1.3
238,463 - EX31_RS01095 0.65 +0.9
238,640 + EX31_RS01095 0.86 +0.7
238,640 + EX31_RS01095 0.86 -0.8
238,640 + EX31_RS01095 0.86 +1.5
238,640 + EX31_RS01095 0.86 +3.6
238,641 - EX31_RS01095 0.86 +0.2
238,641 - EX31_RS01095 0.86 +0.3
238,641 - EX31_RS01095 0.86 +2.7
238,641 - EX31_RS01095 0.86 +1.0
238,642 + EX31_RS01095 0.86 +0.3
238,642 + EX31_RS01095 0.86 +0.0
238,756 + -1.1
238,760 + -3.0
238,760 + -0.1
238,760 + -0.3
238,841 - +0.3
238,884 + -0.5
238,884 + +1.6
238,885 - +0.2
238,901 + -0.8
238,901 + +0.6
238,901 + +1.3
238,901 + -0.3
239,073 - -2.3
239,079 + -0.7
239,117 + +0.5
239,189 - +0.7
239,189 - +0.0
239,191 - +0.3
239,191 - +0.7
239,191 - -0.4
239,196 - +0.4
239,258 - -0.1
239,273 - +1.5
239,337 + +0.7
239,358 - +2.1
239,358 - -1.6
239,461 - EX31_RS01105 0.17 +0.7
239,475 - EX31_RS01105 0.18 -0.7
239,571 - EX31_RS01105 0.26 -0.4
239,698 - EX31_RS01105 0.36 -0.9
239,698 - EX31_RS01105 0.36 -0.0
239,698 - EX31_RS01105 0.36 -0.3
239,774 + EX31_RS01105 0.42 +1.7
239,774 + EX31_RS01105 0.42 +0.7
239,775 - EX31_RS01105 0.42 +0.7
239,775 - EX31_RS01105 0.42 +2.4
239,775 - EX31_RS01105 0.42 +2.1
239,775 - EX31_RS01105 0.42 +0.5
239,775 - EX31_RS01105 0.42 +0.1
239,791 - EX31_RS01105 0.44 +0.2
239,844 - EX31_RS01105 0.48 +0.2
239,861 - EX31_RS01105 0.49 +0.6
239,915 + EX31_RS01105 0.54 +1.5
239,915 + EX31_RS01105 0.54 +0.1
239,916 - EX31_RS01105 0.54 -0.3
239,916 - EX31_RS01105 0.54 -0.9
239,916 - EX31_RS01105 0.54 -0.4
239,916 - EX31_RS01105 0.54 -0.3
239,916 - EX31_RS01105 0.54 -0.2
239,916 - EX31_RS01105 0.54 +0.2
239,916 - EX31_RS01105 0.54 -0.3
239,916 - EX31_RS01105 0.54 -3.2
239,916 - EX31_RS01105 0.54 +0.7
239,916 - EX31_RS01105 0.54 +1.5
239,916 - EX31_RS01105 0.54 -0.6
239,924 + EX31_RS01105 0.54 +0.7
239,924 + EX31_RS01105 0.54 +0.7
239,924 + EX31_RS01105 0.54 +0.4
239,924 + EX31_RS01105 0.54 +0.5
239,924 + EX31_RS01105 0.54 -1.3
239,925 - EX31_RS01105 0.54 +0.4
239,980 + EX31_RS01105 0.59 -0.9
239,981 - EX31_RS01105 0.59 +0.3
239,981 - EX31_RS01105 0.59 +1.7
239,981 - EX31_RS01105 0.59 -1.1

Or see this region's nucleotide sequence