Strain Fitness in Rahnella sp. WP5 around EX31_RS00995

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00990 and EX31_RS00995 overlap by 4 nucleotidesEX31_RS00995 and EX31_RS01000 overlap by 1 nucleotides EX31_RS00990: EX31_RS00990 - type VI secretion system protein TssA, at 213,929 to 214,993 _RS00990 EX31_RS00995: EX31_RS00995 - type VI secretion lipoprotein TssJ, at 214,990 to 215,565 _RS00995 EX31_RS01000: EX31_RS01000 - type VI secretion system baseplate subunit TssK, at 215,565 to 216,959 _RS01000 Position (kb) 214 215 216Strain fitness (log2 ratio) -2 -1 0 1 2 3at 213.991 kb on + strandat 213.998 kb on + strandat 213.998 kb on + strandat 213.998 kb on + strandat 213.998 kb on + strandat 214.010 kb on + strandat 214.010 kb on + strandat 214.010 kb on + strandat 214.050 kb on - strand, within EX31_RS00990at 214.050 kb on - strand, within EX31_RS00990at 214.081 kb on - strand, within EX31_RS00990at 214.477 kb on + strand, within EX31_RS00990at 214.555 kb on + strand, within EX31_RS00990at 214.555 kb on + strand, within EX31_RS00990at 214.555 kb on + strand, within EX31_RS00990at 214.556 kb on - strand, within EX31_RS00990at 214.580 kb on + strand, within EX31_RS00990at 214.581 kb on - strand, within EX31_RS00990at 214.630 kb on + strand, within EX31_RS00990at 214.716 kb on + strand, within EX31_RS00990at 214.716 kb on + strand, within EX31_RS00990at 214.717 kb on - strand, within EX31_RS00990at 214.717 kb on - strand, within EX31_RS00990at 214.717 kb on - strand, within EX31_RS00990at 214.717 kb on - strand, within EX31_RS00990at 214.720 kb on - strand, within EX31_RS00990at 214.720 kb on - strand, within EX31_RS00990at 214.768 kb on + strand, within EX31_RS00990at 214.768 kb on + strand, within EX31_RS00990at 214.768 kb on + strand, within EX31_RS00990at 214.900 kb on + strandat 214.948 kb on + strandat 214.949 kb on - strandat 214.968 kb on + strandat 214.968 kb on + strandat 214.969 kb on - strandat 215.021 kb on + strandat 215.181 kb on + strand, within EX31_RS00995at 215.181 kb on + strand, within EX31_RS00995at 215.182 kb on - strand, within EX31_RS00995at 215.182 kb on - strand, within EX31_RS00995at 215.186 kb on + strand, within EX31_RS00995at 215.186 kb on + strand, within EX31_RS00995at 215.187 kb on - strand, within EX31_RS00995at 215.190 kb on - strand, within EX31_RS00995at 215.196 kb on - strand, within EX31_RS00995at 215.196 kb on - strand, within EX31_RS00995at 215.223 kb on + strand, within EX31_RS00995at 215.228 kb on + strand, within EX31_RS00995at 215.306 kb on - strand, within EX31_RS00995at 215.387 kb on - strand, within EX31_RS00995at 215.387 kb on - strand, within EX31_RS00995at 215.390 kb on - strand, within EX31_RS00995at 215.607 kb on + strandat 215.689 kb on - strandat 215.690 kb on + strandat 215.714 kb on + strand, within EX31_RS01000at 215.714 kb on + strand, within EX31_RS01000at 215.714 kb on + strand, within EX31_RS01000at 215.718 kb on - strand, within EX31_RS01000at 215.768 kb on + strand, within EX31_RS01000at 215.769 kb on - strand, within EX31_RS01000at 216.031 kb on - strand, within EX31_RS01000at 216.031 kb on - strand, within EX31_RS01000at 216.031 kb on - strand, within EX31_RS01000at 216.200 kb on + strand, within EX31_RS01000at 216.201 kb on - strand, within EX31_RS01000at 216.243 kb on + strand, within EX31_RS01000at 216.385 kb on - strand, within EX31_RS01000at 216.484 kb on - strand, within EX31_RS01000at 216.484 kb on - strand, within EX31_RS01000at 216.537 kb on - strand, within EX31_RS01000at 216.537 kb on - strand, within EX31_RS01000at 216.537 kb on - strand, within EX31_RS01000

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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213,991 + +0.6
213,998 + -0.5
213,998 + +0.1
213,998 + +0.8
213,998 + -0.4
214,010 + +0.8
214,010 + +0.1
214,010 + +0.4
214,050 - EX31_RS00990 0.11 -0.4
214,050 - EX31_RS00990 0.11 -0.2
214,081 - EX31_RS00990 0.14 -0.2
214,477 + EX31_RS00990 0.51 +1.8
214,555 + EX31_RS00990 0.59 +1.8
214,555 + EX31_RS00990 0.59 +0.8
214,555 + EX31_RS00990 0.59 +2.0
214,556 - EX31_RS00990 0.59 -0.2
214,580 + EX31_RS00990 0.61 -1.7
214,581 - EX31_RS00990 0.61 +0.0
214,630 + EX31_RS00990 0.66 +0.3
214,716 + EX31_RS00990 0.74 +1.8
214,716 + EX31_RS00990 0.74 -1.2
214,717 - EX31_RS00990 0.74 +1.6
214,717 - EX31_RS00990 0.74 +0.5
214,717 - EX31_RS00990 0.74 -0.4
214,717 - EX31_RS00990 0.74 +0.8
214,720 - EX31_RS00990 0.74 -0.1
214,720 - EX31_RS00990 0.74 +0.4
214,768 + EX31_RS00990 0.79 -2.6
214,768 + EX31_RS00990 0.79 +1.1
214,768 + EX31_RS00990 0.79 +0.8
214,900 + +1.8
214,948 + +1.3
214,949 - +1.6
214,968 + -0.1
214,968 + +0.5
214,969 - +0.8
215,021 + +1.1
215,181 + EX31_RS00995 0.33 +0.8
215,181 + EX31_RS00995 0.33 -0.8
215,182 - EX31_RS00995 0.33 -0.8
215,182 - EX31_RS00995 0.33 +0.1
215,186 + EX31_RS00995 0.34 -1.2
215,186 + EX31_RS00995 0.34 +1.8
215,187 - EX31_RS00995 0.34 -2.3
215,190 - EX31_RS00995 0.35 +0.8
215,196 - EX31_RS00995 0.36 +0.8
215,196 - EX31_RS00995 0.36 +0.2
215,223 + EX31_RS00995 0.40 -0.1
215,228 + EX31_RS00995 0.41 -1.2
215,306 - EX31_RS00995 0.55 -1.2
215,387 - EX31_RS00995 0.69 +0.3
215,387 - EX31_RS00995 0.69 -1.0
215,390 - EX31_RS00995 0.69 +0.8
215,607 + +0.8
215,689 - +0.2
215,690 + +0.0
215,714 + EX31_RS01000 0.11 -1.8
215,714 + EX31_RS01000 0.11 +0.0
215,714 + EX31_RS01000 0.11 +0.5
215,718 - EX31_RS01000 0.11 +1.5
215,768 + EX31_RS01000 0.15 -1.2
215,769 - EX31_RS01000 0.15 -0.2
216,031 - EX31_RS01000 0.33 -0.0
216,031 - EX31_RS01000 0.33 -1.1
216,031 - EX31_RS01000 0.33 +1.0
216,200 + EX31_RS01000 0.46 +3.1
216,201 - EX31_RS01000 0.46 +0.2
216,243 + EX31_RS01000 0.49 +0.0
216,385 - EX31_RS01000 0.59 -2.0
216,484 - EX31_RS01000 0.66 -2.0
216,484 - EX31_RS01000 0.66 +0.4
216,537 - EX31_RS01000 0.70 +0.5
216,537 - EX31_RS01000 0.70 +0.1
216,537 - EX31_RS01000 0.70 -2.4

Or see this region's nucleotide sequence