Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS18130 and CA265_RS18135 are separated by 225 nucleotides CA265_RS18135 and CA265_RS18140 are separated by 14 nucleotides
CA265_RS18130: CA265_RS18130 - gliding motility-associated lipoprotein, at 4,525,491 to 4,526,816
_RS18130
CA265_RS18135: CA265_RS18135 - uroporphyrinogen-III synthase, at 4,527,042 to 4,527,812
_RS18135
CA265_RS18140: CA265_RS18140 - DUF4271 domain-containing protein, at 4,527,827 to 4,528,804
_RS18140
Position (kb)
4527
4528 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4526.092 kb on + strand, within CA265_RS18130 at 4526.093 kb on - strand, within CA265_RS18130 at 4526.141 kb on - strand, within CA265_RS18130 at 4526.203 kb on + strand, within CA265_RS18130 at 4526.204 kb on - strand, within CA265_RS18130 at 4526.232 kb on - strand, within CA265_RS18130 at 4526.260 kb on - strand, within CA265_RS18130 at 4526.269 kb on + strand, within CA265_RS18130 at 4526.286 kb on - strand, within CA265_RS18130 at 4526.295 kb on + strand, within CA265_RS18130 at 4526.295 kb on + strand, within CA265_RS18130 at 4526.322 kb on + strand, within CA265_RS18130 at 4526.332 kb on + strand, within CA265_RS18130 at 4526.333 kb on - strand, within CA265_RS18130 at 4526.335 kb on + strand, within CA265_RS18130 at 4526.336 kb on - strand, within CA265_RS18130 at 4526.434 kb on + strand, within CA265_RS18130 at 4526.483 kb on + strand, within CA265_RS18130 at 4526.609 kb on + strand, within CA265_RS18130 at 4526.664 kb on - strand, within CA265_RS18130 at 4526.680 kb on + strand, within CA265_RS18130 at 4526.680 kb on + strand, within CA265_RS18130 at 4526.703 kb on - strand at 4526.726 kb on - strand at 4526.775 kb on + strand at 4526.776 kb on - strand at 4526.776 kb on - strand at 4526.776 kb on - strand at 4526.776 kb on - strand at 4526.782 kb on - strand at 4526.782 kb on - strand at 4526.782 kb on - strand at 4526.787 kb on + strand at 4526.787 kb on + strand at 4526.787 kb on + strand at 4526.796 kb on + strand at 4526.823 kb on + strand at 4526.844 kb on - strand at 4526.891 kb on - strand at 4526.929 kb on - strand at 4526.954 kb on - strand at 4527.044 kb on - strand at 4527.055 kb on - strand at 4527.274 kb on - strand, within CA265_RS18135 at 4527.385 kb on + strand, within CA265_RS18135 at 4527.415 kb on - strand, within CA265_RS18135 at 4527.482 kb on - strand, within CA265_RS18135 at 4527.482 kb on - strand, within CA265_RS18135 at 4527.636 kb on - strand, within CA265_RS18135 at 4527.829 kb on - strand at 4527.845 kb on - strand at 4527.913 kb on + strand at 4527.919 kb on + strand at 4527.926 kb on + strand, within CA265_RS18140 at 4527.947 kb on + strand, within CA265_RS18140 at 4527.997 kb on - strand, within CA265_RS18140 at 4528.012 kb on + strand, within CA265_RS18140 at 4528.178 kb on - strand, within CA265_RS18140 at 4528.178 kb on - strand, within CA265_RS18140 at 4528.188 kb on - strand, within CA265_RS18140 at 4528.189 kb on + strand, within CA265_RS18140 at 4528.189 kb on + strand, within CA265_RS18140 at 4528.189 kb on + strand, within CA265_RS18140 at 4528.224 kb on + strand, within CA265_RS18140 at 4528.224 kb on + strand, within CA265_RS18140 at 4528.225 kb on - strand, within CA265_RS18140 at 4528.336 kb on + strand, within CA265_RS18140 at 4528.343 kb on + strand, within CA265_RS18140 at 4528.430 kb on - strand, within CA265_RS18140 at 4528.518 kb on + strand, within CA265_RS18140 at 4528.518 kb on + strand, within CA265_RS18140 at 4528.519 kb on - strand, within CA265_RS18140 at 4528.607 kb on - strand, within CA265_RS18140 at 4528.686 kb on + strand, within CA265_RS18140 at 4528.693 kb on + strand, within CA265_RS18140 at 4528.694 kb on - strand, within CA265_RS18140 at 4528.721 kb on - strand at 4528.752 kb on - strand at 4528.810 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 4,526,092 + CA265_RS18130 0.45 +0.8 4,526,093 - CA265_RS18130 0.45 -1.6 4,526,141 - CA265_RS18130 0.49 +0.6 4,526,203 + CA265_RS18130 0.54 +0.5 4,526,204 - CA265_RS18130 0.54 -0.0 4,526,232 - CA265_RS18130 0.56 +0.3 4,526,260 - CA265_RS18130 0.58 +0.5 4,526,269 + CA265_RS18130 0.59 +0.7 4,526,286 - CA265_RS18130 0.60 +0.4 4,526,295 + CA265_RS18130 0.61 +0.1 4,526,295 + CA265_RS18130 0.61 -1.3 4,526,322 + CA265_RS18130 0.63 +0.8 4,526,332 + CA265_RS18130 0.63 +0.5 4,526,333 - CA265_RS18130 0.63 +0.0 4,526,335 + CA265_RS18130 0.64 +0.4 4,526,336 - CA265_RS18130 0.64 +0.6 4,526,434 + CA265_RS18130 0.71 +0.5 4,526,483 + CA265_RS18130 0.75 +0.7 4,526,609 + CA265_RS18130 0.84 +0.1 4,526,664 - CA265_RS18130 0.88 +0.7 4,526,680 + CA265_RS18130 0.90 +0.0 4,526,680 + CA265_RS18130 0.90 -0.4 4,526,703 - +0.6 4,526,726 - +0.1 4,526,775 + +0.3 4,526,776 - +0.1 4,526,776 - +0.1 4,526,776 - +1.1 4,526,776 - +0.6 4,526,782 - -1.2 4,526,782 - -0.8 4,526,782 - +1.1 4,526,787 + +0.5 4,526,787 + +0.9 4,526,787 + +0.1 4,526,796 + -0.5 4,526,823 + -0.1 4,526,844 - -1.2 4,526,891 - -0.0 4,526,929 - -2.2 4,526,954 - +0.1 4,527,044 - +0.1 4,527,055 - -0.1 4,527,274 - CA265_RS18135 0.30 -2.2 4,527,385 + CA265_RS18135 0.44 -1.4 4,527,415 - CA265_RS18135 0.48 -0.8 4,527,482 - CA265_RS18135 0.57 +0.2 4,527,482 - CA265_RS18135 0.57 -0.8 4,527,636 - CA265_RS18135 0.77 -2.8 4,527,829 - -0.9 4,527,845 - -0.2 4,527,913 + -0.7 4,527,919 + -1.2 4,527,926 + CA265_RS18140 0.10 -0.9 4,527,947 + CA265_RS18140 0.12 +0.1 4,527,997 - CA265_RS18140 0.17 -0.5 4,528,012 + CA265_RS18140 0.19 -0.5 4,528,178 - CA265_RS18140 0.36 -0.3 4,528,178 - CA265_RS18140 0.36 -0.6 4,528,188 - CA265_RS18140 0.37 -0.8 4,528,189 + CA265_RS18140 0.37 -1.1 4,528,189 + CA265_RS18140 0.37 -1.2 4,528,189 + CA265_RS18140 0.37 +0.4 4,528,224 + CA265_RS18140 0.41 -1.5 4,528,224 + CA265_RS18140 0.41 -2.2 4,528,225 - CA265_RS18140 0.41 -1.7 4,528,336 + CA265_RS18140 0.52 -0.1 4,528,343 + CA265_RS18140 0.53 +0.6 4,528,430 - CA265_RS18140 0.62 -0.4 4,528,518 + CA265_RS18140 0.71 +0.3 4,528,518 + CA265_RS18140 0.71 -0.8 4,528,519 - CA265_RS18140 0.71 -1.2 4,528,607 - CA265_RS18140 0.80 -0.4 4,528,686 + CA265_RS18140 0.88 -0.5 4,528,693 + CA265_RS18140 0.89 -1.6 4,528,694 - CA265_RS18140 0.89 +0.6 4,528,721 - -0.2 4,528,752 - +0.1 4,528,810 - -0.0
Or see this region's nucleotide sequence