Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS36400

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS36395 and BPHYT_RS36400 are separated by 683 nucleotidesBPHYT_RS36400 and BPHYT_RS36405 overlap by 4 nucleotides BPHYT_RS36395: BPHYT_RS36395 - hypothetical protein, at 91,609 to 91,920 _RS36395 BPHYT_RS36400: BPHYT_RS36400 - hypothetical protein, at 92,604 to 93,197 _RS36400 BPHYT_RS36405: BPHYT_RS36405 - hypothetical protein, at 93,194 to 94,993 _RS36405 Position (kb) 92 93 94Strain fitness (log2 ratio) -1 0 1at 91.650 kb on + strand, within BPHYT_RS36395at 91.651 kb on - strand, within BPHYT_RS36395at 91.985 kb on - strandat 91.985 kb on - strandat 92.180 kb on + strandat 92.185 kb on - strandat 92.185 kb on - strandat 92.190 kb on + strandat 92.630 kb on - strandat 92.925 kb on - strand, within BPHYT_RS36400at 93.307 kb on + strandat 93.330 kb on + strandat 93.347 kb on + strandat 93.393 kb on + strand, within BPHYT_RS36405at 93.394 kb on - strand, within BPHYT_RS36405at 93.400 kb on - strand, within BPHYT_RS36405at 93.563 kb on + strand, within BPHYT_RS36405at 93.563 kb on + strand, within BPHYT_RS36405at 93.564 kb on - strand, within BPHYT_RS36405at 93.564 kb on - strand, within BPHYT_RS36405at 93.686 kb on + strand, within BPHYT_RS36405at 93.687 kb on - strand, within BPHYT_RS36405at 93.804 kb on - strand, within BPHYT_RS36405at 93.846 kb on - strand, within BPHYT_RS36405at 93.846 kb on - strand, within BPHYT_RS36405at 93.968 kb on + strand, within BPHYT_RS36405at 93.968 kb on + strand, within BPHYT_RS36405at 93.969 kb on - strand, within BPHYT_RS36405at 94.063 kb on - strand, within BPHYT_RS36405

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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91,650 + BPHYT_RS36395 0.13 +0.0
91,651 - BPHYT_RS36395 0.13 +0.3
91,985 - +0.4
91,985 - +0.2
92,180 + -0.5
92,185 - -0.7
92,185 - +0.7
92,190 + -0.4
92,630 - +0.4
92,925 - BPHYT_RS36400 0.54 +0.9
93,307 + -1.1
93,330 + +0.9
93,347 + +0.6
93,393 + BPHYT_RS36405 0.11 +1.2
93,394 - BPHYT_RS36405 0.11 -0.7
93,400 - BPHYT_RS36405 0.11 +0.3
93,563 + BPHYT_RS36405 0.20 -0.1
93,563 + BPHYT_RS36405 0.20 +0.6
93,564 - BPHYT_RS36405 0.21 -1.1
93,564 - BPHYT_RS36405 0.21 -0.0
93,686 + BPHYT_RS36405 0.27 -0.1
93,687 - BPHYT_RS36405 0.27 +0.9
93,804 - BPHYT_RS36405 0.34 +0.1
93,846 - BPHYT_RS36405 0.36 -1.5
93,846 - BPHYT_RS36405 0.36 -0.5
93,968 + BPHYT_RS36405 0.43 -0.1
93,968 + BPHYT_RS36405 0.43 -1.3
93,969 - BPHYT_RS36405 0.43 +0.7
94,063 - BPHYT_RS36405 0.48 -0.7

Or see this region's nucleotide sequence