Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29475

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS29470 and BPHYT_RS29475 overlap by 4 nucleotidesBPHYT_RS29475 and BPHYT_RS29480 overlap by 4 nucleotidesBPHYT_RS29480 and BPHYT_RS29485 are separated by 8 nucleotides BPHYT_RS29470: BPHYT_RS29470 - carbon-phosphorus lyase complex subunit PhnI, at 2,164,193 to 2,165,338 _RS29470 BPHYT_RS29475: BPHYT_RS29475 - carbon-phosphorus lyase complex subunit PhnJ, at 2,165,335 to 2,166,267 _RS29475 BPHYT_RS29480: BPHYT_RS29480 - phosphonate C-P lyase, at 2,166,264 to 2,167,034 _RS29480 BPHYT_RS29485: BPHYT_RS29485 - phosphonate ABC transporter ATP-binding protein, at 2,167,043 to 2,167,807 _RS29485 Position (kb) 2165 2166 2167Strain fitness (log2 ratio) -1 0 1at 2165.900 kb on - strand, within BPHYT_RS29475at 2165.974 kb on - strand, within BPHYT_RS29475

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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2,165,900 - BPHYT_RS29475 0.61 +0.5
2,165,974 - BPHYT_RS29475 0.68 +0.7

Or see this region's nucleotide sequence