Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26085

Experiment: inner cut, LB soft agar motility assay

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS26080 and BPHYT_RS26085 are separated by 46 nucleotidesBPHYT_RS26085 and BPHYT_RS26090 are separated by 209 nucleotides BPHYT_RS26080: BPHYT_RS26080 - ABC transporter ATPase, at 1,426,300 to 1,427,883 _RS26080 BPHYT_RS26085: BPHYT_RS26085 - ABC transporter substrate-binding protein, at 1,427,930 to 1,428,907 _RS26085 BPHYT_RS26090: BPHYT_RS26090 - isochorismatase hydrolase, at 1,429,117 to 1,429,917 _RS26090 Position (kb) 1427 1428 1429Strain fitness (log2 ratio) -1 0 1at 1428.064 kb on + strand, within BPHYT_RS26085at 1428.064 kb on + strand, within BPHYT_RS26085at 1428.067 kb on - strand, within BPHYT_RS26085at 1428.181 kb on - strand, within BPHYT_RS26085at 1428.334 kb on - strand, within BPHYT_RS26085at 1428.433 kb on - strand, within BPHYT_RS26085at 1429.502 kb on - strand, within BPHYT_RS26090

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
remove
1,428,064 + BPHYT_RS26085 0.14 +1.1
1,428,064 + BPHYT_RS26085 0.14 -0.2
1,428,067 - BPHYT_RS26085 0.14 +1.0
1,428,181 - BPHYT_RS26085 0.26 +0.9
1,428,334 - BPHYT_RS26085 0.41 +0.4
1,428,433 - BPHYT_RS26085 0.51 +1.1
1,429,502 - BPHYT_RS26090 0.48 -0.6

Or see this region's nucleotide sequence