Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20480 and BPHYT_RS20485 are separated by 200 nucleotides BPHYT_RS20485 and BPHYT_RS20490 are separated by 327 nucleotides
BPHYT_RS20480: BPHYT_RS20480 - hypothetical protein, at 156,492 to 157,259
_RS20480
BPHYT_RS20485: BPHYT_RS20485 - chemotaxis protein, at 157,460 to 159,007
_RS20485
BPHYT_RS20490: BPHYT_RS20490 - porin, at 159,335 to 160,393
_RS20490
Position (kb) 157
158
159
160 Strain fitness (log2 ratio) -2
-1
0
1 at 156.711 kb on + strand, within BPHYT_RS20480 at 156.712 kb on - strand, within BPHYT_RS20480 at 156.861 kb on + strand, within BPHYT_RS20480 at 156.861 kb on + strand, within BPHYT_RS20480 at 156.862 kb on - strand, within BPHYT_RS20480 at 156.862 kb on - strand, within BPHYT_RS20480 at 156.975 kb on + strand, within BPHYT_RS20480 at 156.975 kb on + strand, within BPHYT_RS20480 at 156.982 kb on - strand, within BPHYT_RS20480 at 156.982 kb on - strand, within BPHYT_RS20480 at 156.982 kb on - strand, within BPHYT_RS20480 at 156.982 kb on - strand, within BPHYT_RS20480 at 157.071 kb on + strand, within BPHYT_RS20480 at 157.072 kb on - strand, within BPHYT_RS20480 at 157.134 kb on + strand, within BPHYT_RS20480 at 157.660 kb on + strand, within BPHYT_RS20485 at 157.660 kb on + strand, within BPHYT_RS20485 at 157.707 kb on + strand, within BPHYT_RS20485 at 157.728 kb on - strand, within BPHYT_RS20485 at 157.835 kb on + strand, within BPHYT_RS20485 at 157.835 kb on + strand, within BPHYT_RS20485 at 157.835 kb on + strand, within BPHYT_RS20485 at 157.835 kb on + strand, within BPHYT_RS20485 at 157.952 kb on + strand, within BPHYT_RS20485 at 158.130 kb on - strand, within BPHYT_RS20485 at 158.225 kb on + strand, within BPHYT_RS20485 at 158.225 kb on + strand, within BPHYT_RS20485 at 158.226 kb on - strand, within BPHYT_RS20485 at 158.584 kb on + strand, within BPHYT_RS20485 at 158.584 kb on + strand, within BPHYT_RS20485 at 158.584 kb on + strand, within BPHYT_RS20485 at 159.102 kb on + strand at 159.102 kb on + strand at 159.173 kb on + strand at 159.173 kb on + strand at 159.267 kb on - strand at 159.459 kb on - strand, within BPHYT_RS20490 at 159.486 kb on + strand, within BPHYT_RS20490 at 159.655 kb on - strand, within BPHYT_RS20490 at 159.719 kb on + strand, within BPHYT_RS20490 at 159.720 kb on - strand, within BPHYT_RS20490 at 159.731 kb on + strand, within BPHYT_RS20490 at 159.731 kb on + strand, within BPHYT_RS20490 at 159.731 kb on + strand at 159.732 kb on - strand, within BPHYT_RS20490 at 159.732 kb on - strand, within BPHYT_RS20490 at 159.732 kb on - strand, within BPHYT_RS20490 at 159.732 kb on - strand, within BPHYT_RS20490 at 159.836 kb on + strand, within BPHYT_RS20490 at 159.837 kb on - strand, within BPHYT_RS20490 at 159.927 kb on - strand, within BPHYT_RS20490 at 159.929 kb on + strand, within BPHYT_RS20490 at 159.930 kb on - strand, within BPHYT_RS20490 at 159.934 kb on - strand, within BPHYT_RS20490 at 159.972 kb on - strand, within BPHYT_RS20490
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 156,711 + BPHYT_RS20480 0.29 -1.3 156,712 - BPHYT_RS20480 0.29 +0.2 156,861 + BPHYT_RS20480 0.48 -0.6 156,861 + BPHYT_RS20480 0.48 -0.8 156,862 - BPHYT_RS20480 0.48 -0.6 156,862 - BPHYT_RS20480 0.48 +1.3 156,975 + BPHYT_RS20480 0.63 +0.1 156,975 + BPHYT_RS20480 0.63 +0.2 156,982 - BPHYT_RS20480 0.64 -0.3 156,982 - BPHYT_RS20480 0.64 +0.7 156,982 - BPHYT_RS20480 0.64 +0.3 156,982 - BPHYT_RS20480 0.64 -0.0 157,071 + BPHYT_RS20480 0.75 -0.3 157,072 - BPHYT_RS20480 0.76 -1.3 157,134 + BPHYT_RS20480 0.84 +0.8 157,660 + BPHYT_RS20485 0.13 -0.2 157,660 + BPHYT_RS20485 0.13 -0.6 157,707 + BPHYT_RS20485 0.16 -1.9 157,728 - BPHYT_RS20485 0.17 -1.1 157,835 + BPHYT_RS20485 0.24 -0.3 157,835 + BPHYT_RS20485 0.24 +0.0 157,835 + BPHYT_RS20485 0.24 -0.1 157,835 + BPHYT_RS20485 0.24 +0.0 157,952 + BPHYT_RS20485 0.32 +0.2 158,130 - BPHYT_RS20485 0.43 -0.6 158,225 + BPHYT_RS20485 0.49 -0.1 158,225 + BPHYT_RS20485 0.49 +0.1 158,226 - BPHYT_RS20485 0.49 +0.5 158,584 + BPHYT_RS20485 0.73 +0.7 158,584 + BPHYT_RS20485 0.73 +0.1 158,584 + BPHYT_RS20485 0.73 +1.3 159,102 + +0.4 159,102 + -0.9 159,173 + -0.6 159,173 + +0.4 159,267 - -2.2 159,459 - BPHYT_RS20490 0.12 +0.9 159,486 + BPHYT_RS20490 0.14 +0.3 159,655 - BPHYT_RS20490 0.30 +0.8 159,719 + BPHYT_RS20490 0.36 -0.1 159,720 - BPHYT_RS20490 0.36 +0.5 159,731 + BPHYT_RS20490 0.37 -0.1 159,731 + BPHYT_RS20490 0.37 -0.9 159,731 + +1.5 159,732 - BPHYT_RS20490 0.37 +0.0 159,732 - BPHYT_RS20490 0.37 -1.9 159,732 - BPHYT_RS20490 0.37 +0.1 159,732 - BPHYT_RS20490 0.37 +0.6 159,836 + BPHYT_RS20490 0.47 +0.7 159,837 - BPHYT_RS20490 0.47 +1.3 159,927 - BPHYT_RS20490 0.56 -0.2 159,929 + BPHYT_RS20490 0.56 -0.1 159,930 - BPHYT_RS20490 0.56 +0.8 159,934 - BPHYT_RS20490 0.57 -0.0 159,972 - BPHYT_RS20490 0.60 -0.0
Or see this region's nucleotide sequence