Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18695

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS18690 and BPHYT_RS18695 are separated by 241 nucleotidesBPHYT_RS18695 and BPHYT_RS18700 are separated by 35 nucleotidesBPHYT_RS18700 and BPHYT_RS18705 are separated by 7 nucleotides BPHYT_RS18690: BPHYT_RS18690 - ABC transporter, at 4,201,727 to 4,203,355 _RS18690 BPHYT_RS18695: BPHYT_RS18695 - ABC transporter, at 4,203,597 to 4,205,240 _RS18695 BPHYT_RS18700: BPHYT_RS18700 - hypothetical protein, at 4,205,276 to 4,205,533 _RS18700 BPHYT_RS18705: BPHYT_RS18705 - 5,10-methylenetetrahydrofolate reductase, at 4,205,541 to 4,206,371 _RS18705 Position (kb) 4203 4204 4205 4206Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4202.641 kb on - strand, within BPHYT_RS18690at 4202.641 kb on - strand, within BPHYT_RS18690at 4202.682 kb on + strand, within BPHYT_RS18690at 4202.683 kb on - strand, within BPHYT_RS18690at 4202.683 kb on - strand, within BPHYT_RS18690at 4202.910 kb on + strand, within BPHYT_RS18690at 4202.911 kb on - strand, within BPHYT_RS18690at 4202.936 kb on - strand, within BPHYT_RS18690at 4203.063 kb on + strand, within BPHYT_RS18690at 4203.064 kb on - strand, within BPHYT_RS18690at 4203.064 kb on - strand, within BPHYT_RS18690at 4203.154 kb on - strand, within BPHYT_RS18690at 4203.167 kb on - strand, within BPHYT_RS18690at 4203.167 kb on - strand, within BPHYT_RS18690at 4203.195 kb on + strandat 4203.195 kb on + strandat 4203.320 kb on - strandat 4203.392 kb on - strandat 4203.392 kb on - strandat 4203.399 kb on + strandat 4203.402 kb on + strandat 4203.402 kb on + strandat 4203.402 kb on + strandat 4203.403 kb on - strandat 4203.403 kb on - strandat 4203.403 kb on - strandat 4203.403 kb on - strandat 4203.598 kb on + strandat 4203.599 kb on - strandat 4203.599 kb on - strandat 4203.599 kb on - strandat 4203.745 kb on + strandat 4203.746 kb on - strandat 4203.746 kb on - strandat 4203.806 kb on - strand, within BPHYT_RS18695at 4203.814 kb on + strand, within BPHYT_RS18695at 4203.951 kb on - strand, within BPHYT_RS18695at 4203.951 kb on - strand, within BPHYT_RS18695at 4203.951 kb on - strand, within BPHYT_RS18695at 4203.952 kb on + strand, within BPHYT_RS18695at 4203.953 kb on - strand, within BPHYT_RS18695at 4203.953 kb on - strand, within BPHYT_RS18695at 4203.967 kb on + strand, within BPHYT_RS18695at 4203.968 kb on - strand, within BPHYT_RS18695at 4203.968 kb on - strand, within BPHYT_RS18695at 4204.048 kb on + strand, within BPHYT_RS18695at 4204.222 kb on + strand, within BPHYT_RS18695at 4204.222 kb on + strand, within BPHYT_RS18695at 4204.222 kb on + strand, within BPHYT_RS18695at 4204.223 kb on - strand, within BPHYT_RS18695at 4204.247 kb on + strand, within BPHYT_RS18695at 4204.248 kb on - strand, within BPHYT_RS18695at 4204.305 kb on - strand, within BPHYT_RS18695at 4204.313 kb on - strand, within BPHYT_RS18695at 4204.313 kb on - strand, within BPHYT_RS18695at 4204.386 kb on - strand, within BPHYT_RS18695at 4204.402 kb on + strand, within BPHYT_RS18695at 4204.624 kb on + strand, within BPHYT_RS18695at 4204.723 kb on + strand, within BPHYT_RS18695at 4204.723 kb on + strand, within BPHYT_RS18695at 4204.723 kb on + strand, within BPHYT_RS18695at 4204.724 kb on - strand, within BPHYT_RS18695at 4204.724 kb on - strand, within BPHYT_RS18695at 4204.780 kb on + strand, within BPHYT_RS18695at 4204.781 kb on - strand, within BPHYT_RS18695at 4204.781 kb on - strand, within BPHYT_RS18695at 4204.840 kb on + strand, within BPHYT_RS18695at 4204.840 kb on + strand, within BPHYT_RS18695at 4204.840 kb on + strand, within BPHYT_RS18695at 4204.840 kb on + strand, within BPHYT_RS18695at 4204.931 kb on + strand, within BPHYT_RS18695at 4204.931 kb on + strand, within BPHYT_RS18695at 4204.932 kb on - strand, within BPHYT_RS18695at 4204.932 kb on - strand, within BPHYT_RS18695at 4204.932 kb on - strand, within BPHYT_RS18695at 4204.933 kb on + strand, within BPHYT_RS18695at 4204.934 kb on - strand, within BPHYT_RS18695at 4204.954 kb on - strand, within BPHYT_RS18695at 4205.024 kb on - strand, within BPHYT_RS18695at 4205.024 kb on - strand, within BPHYT_RS18695at 4205.032 kb on + strand, within BPHYT_RS18695at 4205.066 kb on - strand, within BPHYT_RS18695at 4205.066 kb on - strand, within BPHYT_RS18695at 4205.283 kb on + strandat 4205.283 kb on + strandat 4205.283 kb on + strandat 4205.284 kb on - strandat 4205.316 kb on + strand, within BPHYT_RS18700at 4205.316 kb on + strand, within BPHYT_RS18700at 4205.317 kb on - strand, within BPHYT_RS18700at 4205.351 kb on - strand, within BPHYT_RS18700at 4205.351 kb on - strand, within BPHYT_RS18700at 4205.439 kb on - strand, within BPHYT_RS18700at 4205.597 kb on - strandat 4205.597 kb on - strandat 4205.870 kb on - strand, within BPHYT_RS18705at 4205.957 kb on - strand, within BPHYT_RS18705at 4206.011 kb on + strand, within BPHYT_RS18705

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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4,202,641 - BPHYT_RS18690 0.56 +0.2
4,202,641 - BPHYT_RS18690 0.56 -0.1
4,202,682 + BPHYT_RS18690 0.59 +0.4
4,202,683 - BPHYT_RS18690 0.59 +1.0
4,202,683 - BPHYT_RS18690 0.59 +0.6
4,202,910 + BPHYT_RS18690 0.73 +0.4
4,202,911 - BPHYT_RS18690 0.73 -0.6
4,202,936 - BPHYT_RS18690 0.74 -0.3
4,203,063 + BPHYT_RS18690 0.82 -0.1
4,203,064 - BPHYT_RS18690 0.82 -0.9
4,203,064 - BPHYT_RS18690 0.82 +1.0
4,203,154 - BPHYT_RS18690 0.88 +0.4
4,203,167 - BPHYT_RS18690 0.88 +0.7
4,203,167 - BPHYT_RS18690 0.88 +0.9
4,203,195 + +0.3
4,203,195 + +0.8
4,203,320 - -0.6
4,203,392 - -0.9
4,203,392 - -0.2
4,203,399 + -0.1
4,203,402 + -0.8
4,203,402 + -0.2
4,203,402 + +0.6
4,203,403 - -0.1
4,203,403 - -0.6
4,203,403 - -0.5
4,203,403 - -0.3
4,203,598 + -0.3
4,203,599 - -1.1
4,203,599 - -1.9
4,203,599 - +0.0
4,203,745 + -0.7
4,203,746 - -0.6
4,203,746 - +0.5
4,203,806 - BPHYT_RS18695 0.13 +0.3
4,203,814 + BPHYT_RS18695 0.13 +0.4
4,203,951 - BPHYT_RS18695 0.22 +0.5
4,203,951 - BPHYT_RS18695 0.22 +0.7
4,203,951 - BPHYT_RS18695 0.22 -0.5
4,203,952 + BPHYT_RS18695 0.22 +0.1
4,203,953 - BPHYT_RS18695 0.22 -0.2
4,203,953 - BPHYT_RS18695 0.22 -0.7
4,203,967 + BPHYT_RS18695 0.23 +0.1
4,203,968 - BPHYT_RS18695 0.23 -0.1
4,203,968 - BPHYT_RS18695 0.23 +0.8
4,204,048 + BPHYT_RS18695 0.27 +0.3
4,204,222 + BPHYT_RS18695 0.38 +3.5
4,204,222 + BPHYT_RS18695 0.38 +0.1
4,204,222 + BPHYT_RS18695 0.38 +0.5
4,204,223 - BPHYT_RS18695 0.38 +2.8
4,204,247 + BPHYT_RS18695 0.40 +0.5
4,204,248 - BPHYT_RS18695 0.40 +0.4
4,204,305 - BPHYT_RS18695 0.43 +0.6
4,204,313 - BPHYT_RS18695 0.44 -0.1
4,204,313 - BPHYT_RS18695 0.44 +0.2
4,204,386 - BPHYT_RS18695 0.48 +0.9
4,204,402 + BPHYT_RS18695 0.49 -0.6
4,204,624 + BPHYT_RS18695 0.62 -1.2
4,204,723 + BPHYT_RS18695 0.68 +0.6
4,204,723 + BPHYT_RS18695 0.68 +0.5
4,204,723 + BPHYT_RS18695 0.68 -0.1
4,204,724 - BPHYT_RS18695 0.69 +0.4
4,204,724 - BPHYT_RS18695 0.69 -0.0
4,204,780 + BPHYT_RS18695 0.72 +0.6
4,204,781 - BPHYT_RS18695 0.72 -0.3
4,204,781 - BPHYT_RS18695 0.72 -0.2
4,204,840 + BPHYT_RS18695 0.76 +0.7
4,204,840 + BPHYT_RS18695 0.76 +0.5
4,204,840 + BPHYT_RS18695 0.76 +2.2
4,204,840 + BPHYT_RS18695 0.76 +1.0
4,204,931 + BPHYT_RS18695 0.81 +0.1
4,204,931 + BPHYT_RS18695 0.81 -1.2
4,204,932 - BPHYT_RS18695 0.81 +0.3
4,204,932 - BPHYT_RS18695 0.81 +0.4
4,204,932 - BPHYT_RS18695 0.81 +0.2
4,204,933 + BPHYT_RS18695 0.81 +0.5
4,204,934 - BPHYT_RS18695 0.81 +0.1
4,204,954 - BPHYT_RS18695 0.83 +0.2
4,205,024 - BPHYT_RS18695 0.87 -0.1
4,205,024 - BPHYT_RS18695 0.87 -1.3
4,205,032 + BPHYT_RS18695 0.87 +1.3
4,205,066 - BPHYT_RS18695 0.89 +0.1
4,205,066 - BPHYT_RS18695 0.89 +0.5
4,205,283 + +2.6
4,205,283 + +0.1
4,205,283 + +0.2
4,205,284 - +0.2
4,205,316 + BPHYT_RS18700 0.16 -0.2
4,205,316 + BPHYT_RS18700 0.16 +0.4
4,205,317 - BPHYT_RS18700 0.16 +0.3
4,205,351 - BPHYT_RS18700 0.29 +0.6
4,205,351 - BPHYT_RS18700 0.29 -1.2
4,205,439 - BPHYT_RS18700 0.63 +0.7
4,205,597 - -0.3
4,205,597 - +0.7
4,205,870 - BPHYT_RS18705 0.40 -0.1
4,205,957 - BPHYT_RS18705 0.50 +0.0
4,206,011 + BPHYT_RS18705 0.57 +1.2

Or see this region's nucleotide sequence