Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17695

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS17685 and BPHYT_RS17690 are separated by 229 nucleotidesBPHYT_RS17690 and BPHYT_RS17695 overlap by 4 nucleotidesBPHYT_RS17695 and BPHYT_RS17700 are separated by 79 nucleotidesBPHYT_RS17700 and BPHYT_RS17705 are separated by 113 nucleotides BPHYT_RS17685: BPHYT_RS17685 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data), at 3,996,480 to 3,997,232 _RS17685 BPHYT_RS17690: BPHYT_RS17690 - imidazole glycerol phosphate synthase, at 3,997,462 to 3,998,103 _RS17690 BPHYT_RS17695: BPHYT_RS17695 - membrane protein, at 3,998,100 to 3,998,720 _RS17695 BPHYT_RS17700: BPHYT_RS17700 - imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data), at 3,998,800 to 3,999,387 _RS17700 BPHYT_RS17705: BPHYT_RS17705 - histidinol-phosphate aminotransferase, at 3,999,501 to 4,000,571 _RS17705 Position (kb) 3998 3999Strain fitness (log2 ratio) -1 0 1 2 3 4at 3997.188 kb on + strandat 3997.188 kb on + strandat 3997.188 kb on + strandat 3997.189 kb on - strandat 3997.232 kb on + strandat 3997.232 kb on + strandat 3997.233 kb on - strandat 3997.233 kb on - strandat 3997.233 kb on - strandat 3997.233 kb on - strandat 3997.233 kb on - strandat 3997.334 kb on - strandat 3997.337 kb on - strandat 3997.337 kb on - strandat 3997.387 kb on + strandat 3997.387 kb on + strandat 3997.388 kb on - strandat 3997.410 kb on + strandat 3997.411 kb on - strandat 3997.411 kb on - strandat 3997.411 kb on - strandat 3997.548 kb on + strand, within BPHYT_RS17690at 3997.583 kb on + strand, within BPHYT_RS17690at 3997.583 kb on + strand, within BPHYT_RS17690at 3997.583 kb on + strand, within BPHYT_RS17690at 3997.583 kb on + strand, within BPHYT_RS17690at 3997.628 kb on + strand, within BPHYT_RS17690at 3997.628 kb on + strand, within BPHYT_RS17690at 3997.628 kb on + strand, within BPHYT_RS17690at 3997.628 kb on + strand, within BPHYT_RS17690at 3997.629 kb on - strand, within BPHYT_RS17690at 3997.629 kb on - strand, within BPHYT_RS17690at 3997.629 kb on - strand, within BPHYT_RS17690at 3997.631 kb on + strand, within BPHYT_RS17690at 3997.632 kb on - strand, within BPHYT_RS17690at 3997.646 kb on + strand, within BPHYT_RS17690at 3998.112 kb on - strandat 3998.199 kb on - strand, within BPHYT_RS17695at 3998.199 kb on - strand, within BPHYT_RS17695at 3998.302 kb on + strand, within BPHYT_RS17695at 3998.303 kb on - strand, within BPHYT_RS17695at 3998.303 kb on - strand, within BPHYT_RS17695at 3998.303 kb on - strand, within BPHYT_RS17695at 3998.303 kb on - strand, within BPHYT_RS17695at 3998.327 kb on - strand, within BPHYT_RS17695at 3998.612 kb on + strand, within BPHYT_RS17695at 3998.612 kb on + strand, within BPHYT_RS17695at 3998.613 kb on - strand, within BPHYT_RS17695at 3998.613 kb on - strand, within BPHYT_RS17695at 3998.613 kb on - strand, within BPHYT_RS17695at 3998.699 kb on + strandat 3998.700 kb on - strandat 3998.765 kb on + strandat 3998.779 kb on + strandat 3998.802 kb on - strandat 3998.802 kb on - strandat 3999.104 kb on + strand, within BPHYT_RS17700at 3999.105 kb on - strand, within BPHYT_RS17700at 3999.132 kb on + strand, within BPHYT_RS17700at 3999.133 kb on - strand, within BPHYT_RS17700at 3999.133 kb on - strand, within BPHYT_RS17700at 3999.175 kb on - strand, within BPHYT_RS17700at 3999.175 kb on - strand, within BPHYT_RS17700at 3999.408 kb on + strandat 3999.409 kb on - strandat 3999.409 kb on - strandat 3999.409 kb on - strandat 3999.422 kb on + strandat 3999.422 kb on + strandat 3999.423 kb on - strandat 3999.423 kb on - strandat 3999.453 kb on + strandat 3999.453 kb on + strandat 3999.454 kb on - strandat 3999.454 kb on - strandat 3999.600 kb on - strandat 3999.600 kb on - strandat 3999.633 kb on + strand, within BPHYT_RS17705at 3999.634 kb on - strand, within BPHYT_RS17705

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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3,997,188 + -0.3
3,997,188 + +0.6
3,997,188 + -0.3
3,997,189 - +0.6
3,997,232 + -0.6
3,997,232 + +0.2
3,997,233 - +0.1
3,997,233 - -0.4
3,997,233 - -0.1
3,997,233 - +0.2
3,997,233 - -0.6
3,997,334 - -0.0
3,997,337 - -0.0
3,997,337 - +0.4
3,997,387 + -0.2
3,997,387 + +0.9
3,997,388 - -1.3
3,997,410 + +0.3
3,997,411 - -0.8
3,997,411 - +0.4
3,997,411 - +0.4
3,997,548 + BPHYT_RS17690 0.13 -0.4
3,997,583 + BPHYT_RS17690 0.19 -0.3
3,997,583 + BPHYT_RS17690 0.19 -0.1
3,997,583 + BPHYT_RS17690 0.19 -0.1
3,997,583 + BPHYT_RS17690 0.19 -0.9
3,997,628 + BPHYT_RS17690 0.26 -1.3
3,997,628 + BPHYT_RS17690 0.26 -0.1
3,997,628 + BPHYT_RS17690 0.26 -0.1
3,997,628 + BPHYT_RS17690 0.26 -0.4
3,997,629 - BPHYT_RS17690 0.26 -0.8
3,997,629 - BPHYT_RS17690 0.26 -1.0
3,997,629 - BPHYT_RS17690 0.26 +0.1
3,997,631 + BPHYT_RS17690 0.26 +0.2
3,997,632 - BPHYT_RS17690 0.26 +0.7
3,997,646 + BPHYT_RS17690 0.29 -0.9
3,998,112 - +2.1
3,998,199 - BPHYT_RS17695 0.16 +2.5
3,998,199 - BPHYT_RS17695 0.16 +1.0
3,998,302 + BPHYT_RS17695 0.33 +1.5
3,998,303 - BPHYT_RS17695 0.33 +1.2
3,998,303 - BPHYT_RS17695 0.33 -0.0
3,998,303 - BPHYT_RS17695 0.33 -0.2
3,998,303 - BPHYT_RS17695 0.33 +0.6
3,998,327 - BPHYT_RS17695 0.37 +1.6
3,998,612 + BPHYT_RS17695 0.82 -0.3
3,998,612 + BPHYT_RS17695 0.82 -0.2
3,998,613 - BPHYT_RS17695 0.83 +4.5
3,998,613 - BPHYT_RS17695 0.83 +0.2
3,998,613 - BPHYT_RS17695 0.83 -0.2
3,998,699 + +0.3
3,998,700 - -0.4
3,998,765 + -0.1
3,998,779 + -0.2
3,998,802 - -0.4
3,998,802 - -0.7
3,999,104 + BPHYT_RS17700 0.52 -0.1
3,999,105 - BPHYT_RS17700 0.52 +0.0
3,999,132 + BPHYT_RS17700 0.56 +0.2
3,999,133 - BPHYT_RS17700 0.57 -1.1
3,999,133 - BPHYT_RS17700 0.57 -1.4
3,999,175 - BPHYT_RS17700 0.64 +0.5
3,999,175 - BPHYT_RS17700 0.64 +0.4
3,999,408 + -0.5
3,999,409 - +1.9
3,999,409 - +0.2
3,999,409 - -0.1
3,999,422 + -0.7
3,999,422 + -0.3
3,999,423 - +0.3
3,999,423 - -0.3
3,999,453 + -1.7
3,999,453 + -0.9
3,999,454 - +0.7
3,999,454 - -0.2
3,999,600 - -0.1
3,999,600 - +0.4
3,999,633 + BPHYT_RS17705 0.12 +0.3
3,999,634 - BPHYT_RS17705 0.12 -0.5

Or see this region's nucleotide sequence