Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14430

Experiment: inner cut, LB soft agar motility assay

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS14425 and BPHYT_RS14430 are separated by 102 nucleotidesBPHYT_RS14430 and BPHYT_RS14435 are separated by 111 nucleotides BPHYT_RS14425: BPHYT_RS14425 - 3-ketoacyl-ACP reductase, at 3,290,613 to 3,291,362 _RS14425 BPHYT_RS14430: BPHYT_RS14430 - malonyl CoA-ACP transacylase, at 3,291,465 to 3,292,400 _RS14430 BPHYT_RS14435: BPHYT_RS14435 - 3-oxoacyl-ACP synthase, at 3,292,512 to 3,293,501 _RS14435 Position (kb) 3291 3292 3293Strain fitness (log2 ratio) -1 0 1at 3290.568 kb on - strandat 3290.576 kb on - strandat 3290.598 kb on - strandat 3291.459 kb on - strandat 3291.459 kb on - strandat 3292.421 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
remove
3,290,568 - -0.8
3,290,576 - +0.2
3,290,598 - -0.2
3,291,459 - +1.0
3,291,459 - -0.3
3,292,421 - +0.3

Or see this region's nucleotide sequence