Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07435

Experiment: inner cut, LB soft agar motility assay

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS07430 and BPHYT_RS07435 are separated by 105 nucleotidesBPHYT_RS07435 and BPHYT_RS07440 are separated by 97 nucleotides BPHYT_RS07430: BPHYT_RS07430 - LuxR family transcriptional regulator, at 1,688,873 to 1,690,348 _RS07430 BPHYT_RS07435: BPHYT_RS07435 - amino acid transporter, at 1,690,454 to 1,691,071 _RS07435 BPHYT_RS07440: BPHYT_RS07440 - LysR family transcriptional regulator, at 1,691,169 to 1,692,062 _RS07440 Position (kb) 1690 1691 1692Strain fitness (log2 ratio) -1 0 1at 1689.818 kb on + strand, within BPHYT_RS07430at 1690.680 kb on + strand, within BPHYT_RS07435at 1690.833 kb on + strand, within BPHYT_RS07435at 1691.766 kb on - strand, within BPHYT_RS07440

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
remove
1,689,818 + BPHYT_RS07430 0.64 -0.2
1,690,680 + BPHYT_RS07435 0.37 +0.9
1,690,833 + BPHYT_RS07435 0.61 +0.6
1,691,766 - BPHYT_RS07440 0.67 +1.6

Or see this region's nucleotide sequence