Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01985 and BPHYT_RS01990 are separated by 422 nucleotides BPHYT_RS01990 and BPHYT_RS01995 are separated by 332 nucleotides
BPHYT_RS01985: BPHYT_RS01985 - hypothetical protein, at 448,426 to 449,049
_RS01985
BPHYT_RS01990: BPHYT_RS01990 - methyl-accepting chemotaxis protein, at 449,472 to 451,037
_RS01990
BPHYT_RS01995: BPHYT_RS01995 - pyrimidine permease, at 451,370 to 452,677
_RS01995
Position (kb) 449
450
451
452 Strain fitness (log2 ratio) -2
-1
0
1
2 at 448.880 kb on - strand, within BPHYT_RS01985 at 448.918 kb on + strand, within BPHYT_RS01985 at 449.048 kb on - strand at 449.048 kb on - strand at 449.153 kb on + strand at 449.154 kb on - strand at 449.154 kb on - strand at 449.206 kb on - strand at 449.224 kb on + strand at 449.224 kb on + strand at 449.226 kb on + strand at 449.226 kb on + strand at 449.227 kb on - strand at 449.227 kb on - strand at 449.227 kb on - strand at 449.309 kb on + strand at 449.349 kb on + strand at 449.349 kb on + strand at 449.350 kb on - strand at 449.465 kb on + strand at 449.570 kb on + strand at 449.594 kb on + strand at 449.594 kb on + strand at 450.751 kb on + strand, within BPHYT_RS01990 at 451.009 kb on + strand at 451.054 kb on - strand at 451.111 kb on - strand at 451.287 kb on - strand at 451.342 kb on + strand at 451.382 kb on + strand at 451.450 kb on - strand at 451.558 kb on + strand, within BPHYT_RS01995 at 451.616 kb on + strand, within BPHYT_RS01995 at 451.616 kb on + strand, within BPHYT_RS01995 at 451.616 kb on + strand, within BPHYT_RS01995 at 451.736 kb on + strand, within BPHYT_RS01995 at 451.736 kb on + strand, within BPHYT_RS01995 at 451.737 kb on - strand, within BPHYT_RS01995 at 451.989 kb on - strand, within BPHYT_RS01995 at 451.989 kb on - strand, within BPHYT_RS01995 at 451.989 kb on - strand, within BPHYT_RS01995 at 451.989 kb on - strand, within BPHYT_RS01995 at 451.989 kb on - strand at 451.998 kb on - strand, within BPHYT_RS01995 at 452.030 kb on - strand, within BPHYT_RS01995
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 448,880 - BPHYT_RS01985 0.73 +1.7 448,918 + BPHYT_RS01985 0.79 +0.4 449,048 - -0.6 449,048 - +0.6 449,153 + +0.6 449,154 - +0.2 449,154 - +0.3 449,206 - -0.5 449,224 + -0.2 449,224 + -0.1 449,226 + +0.3 449,226 + +0.2 449,227 - +0.8 449,227 - -0.2 449,227 - -0.1 449,309 + +0.5 449,349 + -0.6 449,349 + -0.5 449,350 - +0.0 449,465 + +1.3 449,570 + +0.2 449,594 + +0.2 449,594 + -0.2 450,751 + BPHYT_RS01990 0.82 -0.3 451,009 + +1.1 451,054 - +0.4 451,111 - +0.1 451,287 - +2.2 451,342 + +0.2 451,382 + -0.3 451,450 - +0.1 451,558 + BPHYT_RS01995 0.14 -0.3 451,616 + BPHYT_RS01995 0.19 +0.3 451,616 + BPHYT_RS01995 0.19 -0.5 451,616 + BPHYT_RS01995 0.19 -0.3 451,736 + BPHYT_RS01995 0.28 -0.6 451,736 + BPHYT_RS01995 0.28 +0.9 451,737 - BPHYT_RS01995 0.28 +0.7 451,989 - BPHYT_RS01995 0.47 -0.3 451,989 - BPHYT_RS01995 0.47 -0.7 451,989 - BPHYT_RS01995 0.47 -2.5 451,989 - BPHYT_RS01995 0.47 -0.6 451,989 - +1.5 451,998 - BPHYT_RS01995 0.48 +0.2 452,030 - BPHYT_RS01995 0.50 +0.1
Or see this region's nucleotide sequence