Experiment: CDM1 without Guanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS14665 and BBR_RS14670 are separated by 4 nucleotides BBR_RS14670 and BBR_RS14675 are separated by 104 nucleotides BBR_RS14675 and BBR_RS14680 are separated by 469 nucleotides
BBR_RS14665: BBR_RS14665 - MATE family efflux transporter, at 1,064,740 to 1,066,122
_RS14665
BBR_RS14670: BBR_RS14670 - excinuclease ABC subunit UvrA, at 1,066,127 to 1,068,370
_RS14670
BBR_RS14675: BBR_RS14675 - IS256 family transposase, at 1,068,475 to 1,068,764
_RS14675
BBR_RS14680: BBR_RS14680 - Fic family protein, at 1,069,234 to 1,070,499
_RS14680
Position (kb) 1066
1067
1068
1069 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1065.142 kb on + strand, within BBR_RS14665 at 1065.142 kb on + strand, within BBR_RS14665 at 1065.155 kb on - strand, within BBR_RS14665 at 1065.220 kb on + strand, within BBR_RS14665 at 1065.223 kb on - strand, within BBR_RS14665 at 1065.228 kb on - strand, within BBR_RS14665 at 1065.259 kb on - strand, within BBR_RS14665 at 1065.259 kb on - strand, within BBR_RS14665 at 1065.261 kb on + strand, within BBR_RS14665 at 1065.294 kb on - strand, within BBR_RS14665 at 1065.347 kb on + strand, within BBR_RS14665 at 1065.361 kb on + strand, within BBR_RS14665 at 1065.383 kb on - strand, within BBR_RS14665 at 1065.388 kb on + strand, within BBR_RS14665 at 1065.548 kb on - strand, within BBR_RS14665 at 1065.591 kb on + strand, within BBR_RS14665 at 1065.618 kb on + strand, within BBR_RS14665 at 1065.623 kb on + strand, within BBR_RS14665 at 1065.623 kb on + strand, within BBR_RS14665 at 1065.631 kb on - strand, within BBR_RS14665 at 1065.631 kb on - strand, within BBR_RS14665 at 1065.634 kb on - strand, within BBR_RS14665 at 1065.650 kb on + strand, within BBR_RS14665 at 1065.652 kb on - strand, within BBR_RS14665 at 1065.915 kb on - strand, within BBR_RS14665 at 1066.021 kb on - strand at 1066.039 kb on + strand at 1066.047 kb on - strand at 1066.063 kb on + strand at 1066.134 kb on + strand at 1066.134 kb on + strand at 1066.351 kb on - strand at 1066.367 kb on - strand, within BBR_RS14670 at 1066.421 kb on - strand, within BBR_RS14670 at 1066.436 kb on + strand, within BBR_RS14670 at 1066.444 kb on - strand, within BBR_RS14670 at 1066.444 kb on - strand, within BBR_RS14670 at 1066.444 kb on - strand, within BBR_RS14670 at 1066.467 kb on + strand, within BBR_RS14670 at 1066.491 kb on - strand, within BBR_RS14670 at 1066.547 kb on - strand, within BBR_RS14670 at 1066.588 kb on - strand, within BBR_RS14670 at 1066.612 kb on - strand, within BBR_RS14670 at 1066.612 kb on - strand, within BBR_RS14670 at 1066.612 kb on - strand, within BBR_RS14670 at 1066.633 kb on - strand, within BBR_RS14670 at 1066.657 kb on + strand, within BBR_RS14670 at 1066.740 kb on - strand, within BBR_RS14670 at 1066.740 kb on - strand, within BBR_RS14670 at 1066.789 kb on + strand, within BBR_RS14670 at 1066.797 kb on - strand, within BBR_RS14670 at 1066.798 kb on + strand, within BBR_RS14670 at 1066.846 kb on + strand, within BBR_RS14670 at 1066.910 kb on - strand, within BBR_RS14670 at 1066.922 kb on + strand, within BBR_RS14670 at 1066.922 kb on + strand, within BBR_RS14670 at 1066.922 kb on + strand, within BBR_RS14670 at 1066.922 kb on + strand, within BBR_RS14670 at 1066.943 kb on - strand, within BBR_RS14670 at 1067.019 kb on - strand, within BBR_RS14670 at 1067.080 kb on + strand, within BBR_RS14670 at 1067.222 kb on + strand, within BBR_RS14670 at 1067.385 kb on + strand, within BBR_RS14670 at 1067.395 kb on + strand, within BBR_RS14670 at 1067.395 kb on + strand, within BBR_RS14670 at 1067.395 kb on + strand, within BBR_RS14670 at 1067.403 kb on - strand, within BBR_RS14670 at 1067.403 kb on - strand, within BBR_RS14670 at 1067.403 kb on - strand, within BBR_RS14670 at 1067.442 kb on + strand, within BBR_RS14670 at 1067.465 kb on + strand, within BBR_RS14670 at 1067.532 kb on + strand, within BBR_RS14670 at 1067.532 kb on + strand, within BBR_RS14670 at 1067.532 kb on - strand, within BBR_RS14670 at 1067.532 kb on - strand, within BBR_RS14670 at 1067.586 kb on - strand, within BBR_RS14670 at 1067.662 kb on - strand, within BBR_RS14670 at 1067.746 kb on + strand, within BBR_RS14670 at 1067.750 kb on + strand, within BBR_RS14670 at 1067.871 kb on - strand, within BBR_RS14670 at 1067.876 kb on + strand, within BBR_RS14670 at 1068.025 kb on + strand, within BBR_RS14670 at 1068.025 kb on + strand, within BBR_RS14670 at 1068.040 kb on + strand, within BBR_RS14670 at 1068.048 kb on - strand, within BBR_RS14670 at 1068.060 kb on + strand, within BBR_RS14670 at 1068.171 kb on + strand at 1068.171 kb on + strand at 1068.206 kb on + strand at 1068.240 kb on + strand at 1068.300 kb on + strand at 1068.418 kb on - strand at 1068.487 kb on - strand at 1068.523 kb on - strand, within BBR_RS14675 at 1068.546 kb on + strand, within BBR_RS14675 at 1068.546 kb on + strand, within BBR_RS14675 at 1068.553 kb on - strand, within BBR_RS14675 at 1068.554 kb on - strand, within BBR_RS14675 at 1068.570 kb on + strand, within BBR_RS14675 at 1068.570 kb on + strand, within BBR_RS14675 at 1068.612 kb on + strand, within BBR_RS14675 at 1068.615 kb on - strand, within BBR_RS14675 at 1068.628 kb on + strand, within BBR_RS14675 at 1068.657 kb on + strand, within BBR_RS14675 at 1068.657 kb on + strand, within BBR_RS14675 at 1068.660 kb on - strand, within BBR_RS14675 at 1068.748 kb on + strand at 1068.764 kb on + strand at 1068.878 kb on - strand at 1068.887 kb on + strand at 1068.914 kb on + strand at 1069.155 kb on + strand at 1069.163 kb on - strand at 1069.193 kb on + strand at 1069.193 kb on + strand at 1069.193 kb on + strand at 1069.201 kb on - strand at 1069.201 kb on - strand at 1069.348 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CDM1 without Guanine remove 1,065,142 + BBR_RS14665 0.29 -1.7 1,065,142 + BBR_RS14665 0.29 -3.1 1,065,155 - BBR_RS14665 0.30 -1.2 1,065,220 + BBR_RS14665 0.35 +0.3 1,065,223 - BBR_RS14665 0.35 -0.9 1,065,228 - BBR_RS14665 0.35 -1.9 1,065,259 - BBR_RS14665 0.38 -1.7 1,065,259 - BBR_RS14665 0.38 -3.4 1,065,261 + BBR_RS14665 0.38 -1.5 1,065,294 - BBR_RS14665 0.40 -1.5 1,065,347 + BBR_RS14665 0.44 -2.7 1,065,361 + BBR_RS14665 0.45 -2.1 1,065,383 - BBR_RS14665 0.46 -0.8 1,065,388 + BBR_RS14665 0.47 -1.7 1,065,548 - BBR_RS14665 0.58 -1.9 1,065,591 + BBR_RS14665 0.62 -2.9 1,065,618 + BBR_RS14665 0.63 -0.3 1,065,623 + BBR_RS14665 0.64 -2.3 1,065,623 + BBR_RS14665 0.64 -2.8 1,065,631 - BBR_RS14665 0.64 -0.9 1,065,631 - BBR_RS14665 0.64 -1.3 1,065,634 - BBR_RS14665 0.65 -1.1 1,065,650 + BBR_RS14665 0.66 -2.1 1,065,652 - BBR_RS14665 0.66 -3.5 1,065,915 - BBR_RS14665 0.85 -2.4 1,066,021 - -0.6 1,066,039 + +1.7 1,066,047 - -1.4 1,066,063 + -0.4 1,066,134 + -2.6 1,066,134 + -1.1 1,066,351 - -2.1 1,066,367 - BBR_RS14670 0.11 -1.8 1,066,421 - BBR_RS14670 0.13 -2.3 1,066,436 + BBR_RS14670 0.14 +0.3 1,066,444 - BBR_RS14670 0.14 -3.3 1,066,444 - BBR_RS14670 0.14 -2.4 1,066,444 - BBR_RS14670 0.14 -2.8 1,066,467 + BBR_RS14670 0.15 -2.1 1,066,491 - BBR_RS14670 0.16 -0.8 1,066,547 - BBR_RS14670 0.19 -0.8 1,066,588 - BBR_RS14670 0.21 -2.2 1,066,612 - BBR_RS14670 0.22 -0.6 1,066,612 - BBR_RS14670 0.22 -2.9 1,066,612 - BBR_RS14670 0.22 -1.8 1,066,633 - BBR_RS14670 0.23 -1.7 1,066,657 + BBR_RS14670 0.24 -0.9 1,066,740 - BBR_RS14670 0.27 +0.9 1,066,740 - BBR_RS14670 0.27 -1.1 1,066,789 + BBR_RS14670 0.30 -1.4 1,066,797 - BBR_RS14670 0.30 -0.7 1,066,798 + BBR_RS14670 0.30 -0.4 1,066,846 + BBR_RS14670 0.32 -0.5 1,066,910 - BBR_RS14670 0.35 -0.0 1,066,922 + BBR_RS14670 0.35 -3.2 1,066,922 + BBR_RS14670 0.35 -1.7 1,066,922 + BBR_RS14670 0.35 +0.1 1,066,922 + BBR_RS14670 0.35 -1.0 1,066,943 - BBR_RS14670 0.36 -1.3 1,067,019 - BBR_RS14670 0.40 -2.6 1,067,080 + BBR_RS14670 0.42 +0.1 1,067,222 + BBR_RS14670 0.49 -1.4 1,067,385 + BBR_RS14670 0.56 -1.3 1,067,395 + BBR_RS14670 0.57 -2.0 1,067,395 + BBR_RS14670 0.57 -2.0 1,067,395 + BBR_RS14670 0.57 -1.6 1,067,403 - BBR_RS14670 0.57 -3.2 1,067,403 - BBR_RS14670 0.57 -1.2 1,067,403 - BBR_RS14670 0.57 -0.5 1,067,442 + BBR_RS14670 0.59 +0.5 1,067,465 + BBR_RS14670 0.60 -1.6 1,067,532 + BBR_RS14670 0.63 +0.9 1,067,532 + BBR_RS14670 0.63 -0.4 1,067,532 - BBR_RS14670 0.63 -1.1 1,067,532 - BBR_RS14670 0.63 -2.0 1,067,586 - BBR_RS14670 0.65 -1.5 1,067,662 - BBR_RS14670 0.68 -2.4 1,067,746 + BBR_RS14670 0.72 -3.0 1,067,750 + BBR_RS14670 0.72 -1.2 1,067,871 - BBR_RS14670 0.78 -1.9 1,067,876 + BBR_RS14670 0.78 +2.9 1,068,025 + BBR_RS14670 0.85 -2.4 1,068,025 + BBR_RS14670 0.85 -1.6 1,068,040 + BBR_RS14670 0.85 +0.5 1,068,048 - BBR_RS14670 0.86 -3.4 1,068,060 + BBR_RS14670 0.86 -0.5 1,068,171 + -2.6 1,068,171 + -1.5 1,068,206 + -0.2 1,068,240 + -0.1 1,068,300 + -1.4 1,068,418 - +0.5 1,068,487 - -0.3 1,068,523 - BBR_RS14675 0.17 -2.7 1,068,546 + BBR_RS14675 0.24 -3.3 1,068,546 + BBR_RS14675 0.24 -1.2 1,068,553 - BBR_RS14675 0.27 -2.5 1,068,554 - BBR_RS14675 0.27 -2.1 1,068,570 + BBR_RS14675 0.33 +0.4 1,068,570 + BBR_RS14675 0.33 -0.3 1,068,612 + BBR_RS14675 0.47 -0.6 1,068,615 - BBR_RS14675 0.48 -0.2 1,068,628 + BBR_RS14675 0.53 -0.2 1,068,657 + BBR_RS14675 0.63 -0.7 1,068,657 + BBR_RS14675 0.63 -0.1 1,068,660 - BBR_RS14675 0.64 -3.0 1,068,748 + -1.3 1,068,764 + -0.4 1,068,878 - -0.8 1,068,887 + +0.5 1,068,914 + -0.8 1,069,155 + -0.2 1,069,163 - -1.4 1,069,193 + -2.1 1,069,193 + -1.0 1,069,193 + -2.6 1,069,201 - -1.0 1,069,201 - -1.1 1,069,348 - +0.5
Or see this region's nucleotide sequence