Experiment: CDM1 without Guanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13085 and BBR_RS13090 are separated by 52 nucleotides BBR_RS13090 and BBR_RS13095 are separated by 179 nucleotides
BBR_RS13085: BBR_RS13085 - sugar ABC transporter permease, at 709,040 to 709,966
_RS13085
BBR_RS13090: BBR_RS13090 - Permease of ABC transporter system for sugars, at 710,019 to 711,017
_RS13090
BBR_RS13095: BBR_RS13095 - beta-galactosidase, at 711,197 to 713,272
_RS13095
Position (kb) 710
711
712 Strain fitness (log2 ratio) -2
-1
0
1
2 at 709.107 kb on - strand at 711.046 kb on - strand at 711.046 kb on - strand at 711.059 kb on + strand at 711.084 kb on + strand at 711.106 kb on + strand at 711.142 kb on - strand at 711.150 kb on + strand at 711.158 kb on - strand at 711.195 kb on + strand at 711.203 kb on - strand at 711.253 kb on - strand at 711.293 kb on - strand at 711.316 kb on - strand at 711.319 kb on + strand at 711.341 kb on - strand at 711.341 kb on - strand at 711.397 kb on - strand at 711.493 kb on + strand, within BBR_RS13095 at 711.502 kb on - strand, within BBR_RS13095 at 711.560 kb on - strand, within BBR_RS13095 at 711.612 kb on + strand, within BBR_RS13095 at 711.643 kb on + strand, within BBR_RS13095 at 711.643 kb on + strand, within BBR_RS13095 at 711.684 kb on + strand, within BBR_RS13095 at 711.692 kb on + strand, within BBR_RS13095 at 711.702 kb on + strand, within BBR_RS13095 at 711.776 kb on + strand, within BBR_RS13095 at 711.885 kb on - strand, within BBR_RS13095 at 711.885 kb on - strand, within BBR_RS13095 at 711.926 kb on + strand, within BBR_RS13095 at 711.941 kb on + strand, within BBR_RS13095 at 711.943 kb on + strand, within BBR_RS13095 at 711.951 kb on - strand, within BBR_RS13095 at 711.975 kb on + strand, within BBR_RS13095
Per-strain Table
Position Strand Gene LocusTag Fraction CDM1 without Guanine remove 709,107 - -1.8 711,046 - -0.4 711,046 - -1.4 711,059 + -0.9 711,084 + -0.1 711,106 + -0.2 711,142 - -1.7 711,150 + -0.1 711,158 - -0.2 711,195 + -0.1 711,203 - -0.3 711,253 - -1.4 711,293 - -0.6 711,316 - -0.8 711,319 + +0.2 711,341 - -0.1 711,341 - +0.5 711,397 - +0.4 711,493 + BBR_RS13095 0.14 +0.4 711,502 - BBR_RS13095 0.15 -0.5 711,560 - BBR_RS13095 0.17 -1.8 711,612 + BBR_RS13095 0.20 +1.2 711,643 + BBR_RS13095 0.21 +0.3 711,643 + BBR_RS13095 0.21 +1.3 711,684 + BBR_RS13095 0.23 +0.3 711,692 + BBR_RS13095 0.24 -0.3 711,702 + BBR_RS13095 0.24 -0.2 711,776 + BBR_RS13095 0.28 +1.9 711,885 - BBR_RS13095 0.33 -0.6 711,885 - BBR_RS13095 0.33 -0.3 711,926 + BBR_RS13095 0.35 +0.9 711,941 + BBR_RS13095 0.36 +1.3 711,943 + BBR_RS13095 0.36 +0.7 711,951 - BBR_RS13095 0.36 -0.9 711,975 + BBR_RS13095 0.37 +0.4
Or see this region's nucleotide sequence