Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_23755 and AO356_23760 are separated by 110 nucleotides AO356_23760 and AO356_23765 are separated by 221 nucleotides AO356_23765 and AO356_23770 overlap by 2 nucleotides AO356_23770 and AO356_23775 are separated by 88 nucleotides
AO356_23755: AO356_23755 - AraC family transcriptional regulator, at 5,332,901 to 5,333,824
_23755
AO356_23760: AO356_23760 - hypothetical protein, at 5,333,935 to 5,334,282
_23760
AO356_23765: AO356_23765 - hypothetical protein, at 5,334,504 to 5,334,692
_23765
AO356_23770: AO356_23770 - hypothetical protein, at 5,334,691 to 5,334,915
_23770
AO356_23775: AO356_23775 - transcriptional regulator, at 5,335,004 to 5,335,954
_23775
Position (kb) 5334
5335 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5333.704 kb on - strand, within AO356_23755 at 5333.906 kb on + strand at 5333.907 kb on - strand at 5333.928 kb on + strand at 5333.928 kb on + strand at 5333.928 kb on + strand at 5333.943 kb on + strand at 5333.943 kb on + strand at 5333.944 kb on - strand at 5334.022 kb on + strand, within AO356_23760 at 5334.023 kb on - strand, within AO356_23760 at 5334.023 kb on - strand, within AO356_23760 at 5334.023 kb on - strand, within AO356_23760 at 5334.023 kb on - strand, within AO356_23760 at 5334.023 kb on - strand, within AO356_23760 at 5334.025 kb on - strand, within AO356_23760 at 5334.227 kb on - strand, within AO356_23760 at 5334.227 kb on - strand, within AO356_23760 at 5334.227 kb on - strand, within AO356_23760 at 5334.232 kb on + strand, within AO356_23760 at 5334.232 kb on + strand, within AO356_23760 at 5334.339 kb on - strand at 5334.398 kb on + strand at 5334.417 kb on + strand at 5334.505 kb on + strand at 5334.505 kb on + strand at 5334.505 kb on + strand at 5334.505 kb on + strand at 5334.506 kb on - strand at 5334.754 kb on + strand, within AO356_23770 at 5334.755 kb on - strand, within AO356_23770 at 5334.844 kb on - strand, within AO356_23770 at 5334.962 kb on + strand at 5334.963 kb on - strand at 5334.963 kb on - strand at 5334.963 kb on - strand at 5335.011 kb on + strand at 5335.011 kb on + strand at 5335.011 kb on + strand at 5335.012 kb on - strand at 5335.313 kb on + strand, within AO356_23775 at 5335.314 kb on - strand, within AO356_23775 at 5335.314 kb on - strand, within AO356_23775 at 5335.314 kb on - strand, within AO356_23775 at 5335.361 kb on - strand, within AO356_23775 at 5335.426 kb on - strand, within AO356_23775 at 5335.426 kb on - strand, within AO356_23775 at 5335.530 kb on - strand, within AO356_23775 at 5335.530 kb on - strand, within AO356_23775 at 5335.530 kb on - strand, within AO356_23775 at 5335.530 kb on - strand, within AO356_23775 at 5335.530 kb on - strand, within AO356_23775 at 5335.530 kb on - strand, within AO356_23775 at 5335.530 kb on - strand, within AO356_23775 at 5335.530 kb on - strand, within AO356_23775 at 5335.609 kb on + strand, within AO356_23775 at 5335.609 kb on + strand, within AO356_23775 at 5335.610 kb on - strand, within AO356_23775 at 5335.625 kb on + strand, within AO356_23775 at 5335.625 kb on + strand, within AO356_23775 at 5335.626 kb on - strand, within AO356_23775 at 5335.626 kb on - strand, within AO356_23775 at 5335.626 kb on - strand, within AO356_23775
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 5,333,704 - AO356_23755 0.87 +0.3 5,333,906 + +0.7 5,333,907 - +1.2 5,333,928 + -0.2 5,333,928 + -0.4 5,333,928 + +0.7 5,333,943 + +0.1 5,333,943 + -0.7 5,333,944 - -0.2 5,334,022 + AO356_23760 0.25 +0.1 5,334,023 - AO356_23760 0.25 +1.8 5,334,023 - AO356_23760 0.25 -0.1 5,334,023 - AO356_23760 0.25 -0.1 5,334,023 - AO356_23760 0.25 +0.8 5,334,023 - AO356_23760 0.25 +0.9 5,334,025 - AO356_23760 0.26 +0.0 5,334,227 - AO356_23760 0.84 +0.9 5,334,227 - AO356_23760 0.84 +0.9 5,334,227 - AO356_23760 0.84 +0.4 5,334,232 + AO356_23760 0.85 +0.8 5,334,232 + AO356_23760 0.85 +0.8 5,334,339 - -0.0 5,334,398 + +0.1 5,334,417 + +0.4 5,334,505 + -0.7 5,334,505 + -2.3 5,334,505 + +0.3 5,334,505 + +0.3 5,334,506 - +0.6 5,334,754 + AO356_23770 0.28 -0.3 5,334,755 - AO356_23770 0.28 -0.0 5,334,844 - AO356_23770 0.68 -0.3 5,334,962 + -0.1 5,334,963 - +0.3 5,334,963 - -0.5 5,334,963 - +0.0 5,335,011 + -0.4 5,335,011 + +0.9 5,335,011 + +0.6 5,335,012 - +0.7 5,335,313 + AO356_23775 0.32 +0.0 5,335,314 - AO356_23775 0.33 +0.8 5,335,314 - AO356_23775 0.33 +1.2 5,335,314 - AO356_23775 0.33 +0.1 5,335,361 - AO356_23775 0.38 -0.9 5,335,426 - AO356_23775 0.44 -0.2 5,335,426 - AO356_23775 0.44 +0.6 5,335,530 - AO356_23775 0.55 +0.9 5,335,530 - AO356_23775 0.55 -0.1 5,335,530 - AO356_23775 0.55 +0.7 5,335,530 - AO356_23775 0.55 +0.6 5,335,530 - AO356_23775 0.55 -0.2 5,335,530 - AO356_23775 0.55 -1.0 5,335,530 - AO356_23775 0.55 -1.4 5,335,530 - AO356_23775 0.55 +0.3 5,335,609 + AO356_23775 0.64 +0.6 5,335,609 + AO356_23775 0.64 +0.4 5,335,610 - AO356_23775 0.64 +0.7 5,335,625 + AO356_23775 0.65 -1.2 5,335,625 + AO356_23775 0.65 -0.6 5,335,626 - AO356_23775 0.65 -0.3 5,335,626 - AO356_23775 0.65 -0.4 5,335,626 - AO356_23775 0.65 +0.7
Or see this region's nucleotide sequence