Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS27670

Experiment: L-Serine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS27660 and RR42_RS27665 are separated by 171 nucleotidesRR42_RS27665 and RR42_RS27670 are separated by 33 nucleotidesRR42_RS27670 and RR42_RS27675 are separated by 295 nucleotides RR42_RS27660: RR42_RS27660 - transcriptional regulator, at 1,568,417 to 1,569,085 _RS27660 RR42_RS27665: RR42_RS27665 - endoribonuclease L-PSP, at 1,569,257 to 1,569,721 _RS27665 RR42_RS27670: RR42_RS27670 - LysR family transcriptional regulator, at 1,569,755 to 1,570,711 _RS27670 RR42_RS27675: RR42_RS27675 - esterase, at 1,571,007 to 1,571,930 _RS27675 Position (kb) 1569 1570 1571Strain fitness (log2 ratio) -1 0 1 2at 1569.096 kb on + strandat 1569.239 kb on + strandat 1569.239 kb on + strandat 1569.239 kb on + strandat 1569.320 kb on + strand, within RR42_RS27665at 1569.321 kb on - strand, within RR42_RS27665at 1569.341 kb on + strand, within RR42_RS27665at 1569.342 kb on - strand, within RR42_RS27665at 1569.894 kb on + strand, within RR42_RS27670at 1569.894 kb on + strand, within RR42_RS27670at 1569.895 kb on - strand, within RR42_RS27670at 1569.923 kb on - strand, within RR42_RS27670at 1570.030 kb on - strand, within RR42_RS27670at 1570.110 kb on - strand, within RR42_RS27670at 1570.110 kb on - strand, within RR42_RS27670at 1570.137 kb on + strand, within RR42_RS27670at 1570.137 kb on + strand, within RR42_RS27670at 1570.137 kb on + strand, within RR42_RS27670at 1570.200 kb on + strand, within RR42_RS27670at 1570.216 kb on - strand, within RR42_RS27670at 1570.515 kb on + strand, within RR42_RS27670at 1570.515 kb on + strand, within RR42_RS27670at 1570.516 kb on - strand, within RR42_RS27670at 1570.518 kb on + strand, within RR42_RS27670at 1570.519 kb on - strand, within RR42_RS27670at 1570.886 kb on - strandat 1570.926 kb on - strandat 1570.948 kb on + strandat 1570.948 kb on + strandat 1570.948 kb on + strandat 1570.948 kb on + strandat 1570.949 kb on - strandat 1570.967 kb on - strandat 1571.044 kb on + strandat 1571.045 kb on - strandat 1571.125 kb on - strand, within RR42_RS27675at 1571.178 kb on + strand, within RR42_RS27675at 1571.178 kb on + strand, within RR42_RS27675at 1571.178 kb on + strand, within RR42_RS27675at 1571.586 kb on + strand, within RR42_RS27675at 1571.587 kb on - strand, within RR42_RS27675at 1571.590 kb on - strand, within RR42_RS27675at 1571.598 kb on + strand, within RR42_RS27675at 1571.632 kb on - strand, within RR42_RS27675

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
remove
1,569,096 + +0.1
1,569,239 + +0.8
1,569,239 + -0.5
1,569,239 + -0.1
1,569,320 + RR42_RS27665 0.14 -0.9
1,569,321 - RR42_RS27665 0.14 -0.1
1,569,341 + RR42_RS27665 0.18 -1.2
1,569,342 - RR42_RS27665 0.18 +0.3
1,569,894 + RR42_RS27670 0.15 -0.6
1,569,894 + RR42_RS27670 0.15 +0.3
1,569,895 - RR42_RS27670 0.15 -1.0
1,569,923 - RR42_RS27670 0.18 -0.1
1,570,030 - RR42_RS27670 0.29 -0.5
1,570,110 - RR42_RS27670 0.37 +1.3
1,570,110 - RR42_RS27670 0.37 +0.2
1,570,137 + RR42_RS27670 0.40 -0.2
1,570,137 + RR42_RS27670 0.40 +0.5
1,570,137 + RR42_RS27670 0.40 +1.9
1,570,200 + RR42_RS27670 0.46 +0.3
1,570,216 - RR42_RS27670 0.48 -0.0
1,570,515 + RR42_RS27670 0.79 -0.4
1,570,515 + RR42_RS27670 0.79 +0.9
1,570,516 - RR42_RS27670 0.80 -0.1
1,570,518 + RR42_RS27670 0.80 +0.0
1,570,519 - RR42_RS27670 0.80 -0.1
1,570,886 - -0.0
1,570,926 - +0.3
1,570,948 + +1.4
1,570,948 + -0.3
1,570,948 + +1.2
1,570,948 + -0.2
1,570,949 - -0.1
1,570,967 - +0.5
1,571,044 + +1.8
1,571,045 - -1.3
1,571,125 - RR42_RS27675 0.13 +0.3
1,571,178 + RR42_RS27675 0.19 -0.2
1,571,178 + RR42_RS27675 0.19 -0.2
1,571,178 + RR42_RS27675 0.19 -0.7
1,571,586 + RR42_RS27675 0.63 +0.6
1,571,587 - RR42_RS27675 0.63 -0.7
1,571,590 - RR42_RS27675 0.63 +0.5
1,571,598 + RR42_RS27675 0.64 +0.4
1,571,632 - RR42_RS27675 0.68 +0.6

Or see this region's nucleotide sequence