Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26455

Experiment: L-Serine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS26445 and RR42_RS26450 are separated by 12 nucleotidesRR42_RS26450 and RR42_RS26455 are separated by 44 nucleotidesRR42_RS26455 and RR42_RS26460 are separated by 46 nucleotides RR42_RS26445: RR42_RS26445 - ABC transporter permease, at 1,289,116 to 1,290,000 _RS26445 RR42_RS26450: RR42_RS26450 - histidinol dehydrogenase, at 1,290,013 to 1,290,723 _RS26450 RR42_RS26455: RR42_RS26455 - amino acid ABC transporter ATP-binding protein, at 1,290,768 to 1,291,544 _RS26455 RR42_RS26460: RR42_RS26460 - ABC transporter permease, at 1,291,591 to 1,292,775 _RS26460 Position (kb) 1290 1291 1292Strain fitness (log2 ratio) -2 -1 0 1at 1289.799 kb on - strand, within RR42_RS26445at 1289.881 kb on - strand, within RR42_RS26445at 1289.881 kb on - strand, within RR42_RS26445at 1289.928 kb on - strandat 1289.928 kb on - strandat 1289.984 kb on - strandat 1290.014 kb on + strandat 1290.105 kb on - strand, within RR42_RS26450at 1290.164 kb on + strand, within RR42_RS26450at 1290.366 kb on - strand, within RR42_RS26450at 1290.366 kb on - strand, within RR42_RS26450at 1290.695 kb on + strandat 1290.696 kb on - strandat 1290.808 kb on + strandat 1290.809 kb on - strandat 1290.809 kb on - strandat 1290.809 kb on - strandat 1290.809 kb on - strandat 1290.809 kb on - strandat 1290.809 kb on - strandat 1290.956 kb on + strand, within RR42_RS26455at 1291.664 kb on + strandat 1291.721 kb on + strand, within RR42_RS26460at 1291.979 kb on + strand, within RR42_RS26460at 1291.980 kb on - strand, within RR42_RS26460at 1291.980 kb on - strand, within RR42_RS26460at 1291.980 kb on - strand, within RR42_RS26460at 1292.279 kb on + strand, within RR42_RS26460at 1292.294 kb on + strand, within RR42_RS26460at 1292.294 kb on + strand, within RR42_RS26460at 1292.295 kb on - strand, within RR42_RS26460at 1292.434 kb on - strand, within RR42_RS26460

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
remove
1,289,799 - RR42_RS26445 0.77 -1.0
1,289,881 - RR42_RS26445 0.86 -0.9
1,289,881 - RR42_RS26445 0.86 +0.5
1,289,928 - -0.9
1,289,928 - +0.0
1,289,984 - +1.1
1,290,014 + -0.1
1,290,105 - RR42_RS26450 0.13 -1.0
1,290,164 + RR42_RS26450 0.21 +0.1
1,290,366 - RR42_RS26450 0.50 +0.2
1,290,366 - RR42_RS26450 0.50 +0.3
1,290,695 + -0.2
1,290,696 - +0.1
1,290,808 + +0.2
1,290,809 - -0.4
1,290,809 - +0.0
1,290,809 - +0.1
1,290,809 - +0.2
1,290,809 - -0.4
1,290,809 - -0.3
1,290,956 + RR42_RS26455 0.24 -2.4
1,291,664 + -1.0
1,291,721 + RR42_RS26460 0.11 -0.7
1,291,979 + RR42_RS26460 0.33 -1.4
1,291,980 - RR42_RS26460 0.33 -0.4
1,291,980 - RR42_RS26460 0.33 +0.2
1,291,980 - RR42_RS26460 0.33 +0.0
1,292,279 + RR42_RS26460 0.58 +0.3
1,292,294 + RR42_RS26460 0.59 +0.8
1,292,294 + RR42_RS26460 0.59 -1.2
1,292,295 - RR42_RS26460 0.59 +0.8
1,292,434 - RR42_RS26460 0.71 -0.5

Or see this region's nucleotide sequence