Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24650 and RR42_RS24655 are separated by 64 nucleotides RR42_RS24655 and RR42_RS24660 are separated by 214 nucleotides RR42_RS24660 and RR42_RS24665 overlap by 4 nucleotides
RR42_RS24650: RR42_RS24650 - membrane protein, at 867,107 to 867,796
_RS24650
RR42_RS24655: RR42_RS24655 - TetR family transcriptional regulator, at 867,861 to 868,562
_RS24655
RR42_RS24660: RR42_RS24660 - acriflavin resistance protein, at 868,777 to 871,884
_RS24660
RR42_RS24665: RR42_RS24665 - hypothetical protein, at 871,881 to 872,990
_RS24665
Position (kb) 868
869
870
871
872 Strain fitness (log2 ratio) -2
-1
0
1 at 867.811 kb on + strand at 867.812 kb on - strand at 867.824 kb on - strand at 867.979 kb on - strand, within RR42_RS24655 at 868.038 kb on + strand, within RR42_RS24655 at 868.038 kb on + strand, within RR42_RS24655 at 868.039 kb on - strand, within RR42_RS24655 at 868.044 kb on + strand, within RR42_RS24655 at 868.045 kb on - strand, within RR42_RS24655 at 868.045 kb on - strand, within RR42_RS24655 at 868.131 kb on - strand, within RR42_RS24655 at 868.267 kb on - strand, within RR42_RS24655 at 868.285 kb on + strand, within RR42_RS24655 at 868.285 kb on + strand, within RR42_RS24655 at 868.285 kb on + strand, within RR42_RS24655 at 868.286 kb on - strand, within RR42_RS24655 at 868.427 kb on + strand, within RR42_RS24655 at 868.428 kb on - strand, within RR42_RS24655 at 868.429 kb on + strand, within RR42_RS24655 at 868.429 kb on + strand, within RR42_RS24655 at 868.429 kb on + strand, within RR42_RS24655 at 868.429 kb on + strand, within RR42_RS24655 at 868.430 kb on - strand, within RR42_RS24655 at 868.430 kb on - strand, within RR42_RS24655 at 868.430 kb on - strand, within RR42_RS24655 at 868.524 kb on + strand at 868.525 kb on + strand at 868.525 kb on + strand at 868.525 kb on + strand at 868.525 kb on + strand at 868.526 kb on - strand at 868.526 kb on - strand at 868.526 kb on - strand at 868.526 kb on - strand at 868.548 kb on - strand at 868.548 kb on - strand at 868.548 kb on - strand at 868.569 kb on + strand at 868.594 kb on - strand at 868.604 kb on + strand at 869.038 kb on + strand at 869.038 kb on + strand at 869.039 kb on - strand at 869.300 kb on + strand, within RR42_RS24660 at 869.300 kb on + strand, within RR42_RS24660 at 869.301 kb on - strand, within RR42_RS24660 at 869.364 kb on - strand, within RR42_RS24660 at 869.436 kb on + strand, within RR42_RS24660 at 869.437 kb on - strand, within RR42_RS24660 at 869.437 kb on - strand, within RR42_RS24660 at 869.460 kb on + strand, within RR42_RS24660 at 869.460 kb on + strand, within RR42_RS24660 at 869.563 kb on + strand, within RR42_RS24660 at 869.564 kb on - strand, within RR42_RS24660 at 869.877 kb on - strand, within RR42_RS24660 at 870.020 kb on + strand, within RR42_RS24660 at 870.020 kb on + strand, within RR42_RS24660 at 870.089 kb on + strand, within RR42_RS24660 at 870.089 kb on + strand, within RR42_RS24660 at 870.213 kb on - strand, within RR42_RS24660 at 870.213 kb on - strand, within RR42_RS24660 at 870.280 kb on - strand, within RR42_RS24660 at 870.357 kb on - strand, within RR42_RS24660 at 870.414 kb on - strand, within RR42_RS24660 at 870.417 kb on - strand, within RR42_RS24660 at 870.417 kb on - strand, within RR42_RS24660 at 870.501 kb on - strand, within RR42_RS24660 at 870.679 kb on + strand, within RR42_RS24660 at 870.680 kb on - strand, within RR42_RS24660 at 870.721 kb on - strand, within RR42_RS24660 at 870.721 kb on - strand, within RR42_RS24660 at 870.721 kb on - strand, within RR42_RS24660 at 870.721 kb on - strand, within RR42_RS24660 at 871.049 kb on + strand, within RR42_RS24660 at 871.049 kb on + strand, within RR42_RS24660 at 871.050 kb on - strand, within RR42_RS24660 at 871.091 kb on - strand, within RR42_RS24660 at 871.252 kb on + strand, within RR42_RS24660 at 871.253 kb on - strand, within RR42_RS24660 at 871.331 kb on + strand, within RR42_RS24660 at 871.334 kb on + strand, within RR42_RS24660 at 871.375 kb on + strand, within RR42_RS24660 at 871.376 kb on - strand, within RR42_RS24660 at 871.376 kb on - strand, within RR42_RS24660 at 871.391 kb on + strand, within RR42_RS24660 at 871.392 kb on - strand, within RR42_RS24660 at 871.392 kb on - strand, within RR42_RS24660 at 871.392 kb on - strand, within RR42_RS24660 at 871.697 kb on - strand at 871.795 kb on + strand at 871.854 kb on + strand at 871.904 kb on + strand at 871.905 kb on - strand at 872.088 kb on + strand, within RR42_RS24665 at 872.099 kb on + strand, within RR42_RS24665
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 867,811 + +0.1 867,812 - +1.0 867,824 - -0.4 867,979 - RR42_RS24655 0.17 -0.2 868,038 + RR42_RS24655 0.25 -0.8 868,038 + RR42_RS24655 0.25 +0.2 868,039 - RR42_RS24655 0.25 -1.2 868,044 + RR42_RS24655 0.26 +0.4 868,045 - RR42_RS24655 0.26 +0.1 868,045 - RR42_RS24655 0.26 -1.7 868,131 - RR42_RS24655 0.38 +0.6 868,267 - RR42_RS24655 0.58 -0.4 868,285 + RR42_RS24655 0.60 -0.7 868,285 + RR42_RS24655 0.60 +1.1 868,285 + RR42_RS24655 0.60 -0.1 868,286 - RR42_RS24655 0.61 +0.9 868,427 + RR42_RS24655 0.81 +1.7 868,428 - RR42_RS24655 0.81 +1.2 868,429 + RR42_RS24655 0.81 -1.2 868,429 + RR42_RS24655 0.81 +0.0 868,429 + RR42_RS24655 0.81 -0.2 868,429 + RR42_RS24655 0.81 +0.8 868,430 - RR42_RS24655 0.81 -0.1 868,430 - RR42_RS24655 0.81 +0.8 868,430 - RR42_RS24655 0.81 -0.2 868,524 + +0.8 868,525 + +0.4 868,525 + -0.1 868,525 + -1.2 868,525 + +0.1 868,526 - +0.2 868,526 - +0.8 868,526 - -0.2 868,526 - +0.3 868,548 - -0.1 868,548 - -0.1 868,548 - -0.5 868,569 + -1.1 868,594 - -0.8 868,604 + -0.9 869,038 + +0.6 869,038 + -0.2 869,039 - +0.1 869,300 + RR42_RS24660 0.17 +0.3 869,300 + RR42_RS24660 0.17 +0.1 869,301 - RR42_RS24660 0.17 +0.7 869,364 - RR42_RS24660 0.19 -1.1 869,436 + RR42_RS24660 0.21 -0.8 869,437 - RR42_RS24660 0.21 -1.2 869,437 - RR42_RS24660 0.21 +0.1 869,460 + RR42_RS24660 0.22 -0.5 869,460 + RR42_RS24660 0.22 +0.5 869,563 + RR42_RS24660 0.25 -1.2 869,564 - RR42_RS24660 0.25 -0.7 869,877 - RR42_RS24660 0.35 +1.5 870,020 + RR42_RS24660 0.40 -0.8 870,020 + RR42_RS24660 0.40 +0.1 870,089 + RR42_RS24660 0.42 +0.1 870,089 + RR42_RS24660 0.42 -0.3 870,213 - RR42_RS24660 0.46 -0.6 870,213 - RR42_RS24660 0.46 +0.3 870,280 - RR42_RS24660 0.48 -0.2 870,357 - RR42_RS24660 0.51 +0.3 870,414 - RR42_RS24660 0.53 -1.8 870,417 - RR42_RS24660 0.53 -0.2 870,417 - RR42_RS24660 0.53 +0.2 870,501 - RR42_RS24660 0.55 -0.7 870,679 + RR42_RS24660 0.61 -0.2 870,680 - RR42_RS24660 0.61 +0.1 870,721 - RR42_RS24660 0.63 -0.7 870,721 - RR42_RS24660 0.63 +0.5 870,721 - RR42_RS24660 0.63 -0.8 870,721 - RR42_RS24660 0.63 -0.7 871,049 + RR42_RS24660 0.73 -1.2 871,049 + RR42_RS24660 0.73 -0.6 871,050 - RR42_RS24660 0.73 +0.1 871,091 - RR42_RS24660 0.74 +0.9 871,252 + RR42_RS24660 0.80 -0.2 871,253 - RR42_RS24660 0.80 -0.4 871,331 + RR42_RS24660 0.82 +0.6 871,334 + RR42_RS24660 0.82 +0.1 871,375 + RR42_RS24660 0.84 -0.9 871,376 - RR42_RS24660 0.84 +0.5 871,376 - RR42_RS24660 0.84 +0.3 871,391 + RR42_RS24660 0.84 -0.3 871,392 - RR42_RS24660 0.84 -0.8 871,392 - RR42_RS24660 0.84 +0.0 871,392 - RR42_RS24660 0.84 -1.1 871,697 - +0.0 871,795 + -0.1 871,854 + -0.1 871,904 + -0.9 871,905 - -0.8 872,088 + RR42_RS24665 0.19 -0.2 872,099 + RR42_RS24665 0.20 +1.0
Or see this region's nucleotide sequence